CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY14351
CDY20218

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27860.1	CDY14351	AT5G53800.1	21798944
AT5G27860.1	CDY20218	AT5G53800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66802	Canola	nucleus, plastid	91.53	93.1
AT5G27860.1	Thale cress	nucleus	90.4	90.4
Os12t0516700-01	Rice	cytosol	27.12	68.57
Solyc01g099930.2.1	Tomato	nucleus, plastid	59.89	60.23
KRH68485	Soybean	nucleus, plastid	61.58	58.92
KRG96768	Soybean	nucleus, plastid	60.45	58.47
TraesCS5B01G098000.1	Wheat	nucleus, plastid	51.98	49.73
TraesCS5A01G091500.1	Wheat	nucleus, plastid	51.98	48.68
TraesCS5D01G103600.1	Wheat	nucleus	51.41	48.66
EES16140	Sorghum	nucleus, plastid	54.8	47.55
Zm00001d023824_P002	Maize	nucleus, plastid	50.85	46.15
Os12t0554000-01	Rice	nucleus	44.63	40.31
HORVU5Hr1G023980.1	Barley	plastid	50.85	39.47

Protein Annotations

EnsemblPlants:CDX80615	EnsemblPlantsGene:GSBRNA2T00133751001	PANTHER:PTHR35760	ProteinID:CDX80615	ProteinID:CDX80615.1	SEG:seg
UniParc:UPI0004EF2882	MapMan:35.2	:	:	:	:

Description

BnaC07g28290D

Coordinates

chrLK031821:+:1691282..1692647

Molecular Weight (calculated)

20428.5 Da

IEP (calculated)

11.388

GRAVY (calculated)

-1.984

Length

177 amino acids

Sequence
(BLAST)

001: MAASSSSSSS DVSSDSSDSN RRRKDRRRHR RSDREKDSLK VRKKSRSSSK RRRKRRHSSD STDSSYSDSS SESSESEHER SRRHKKHDKP KKAKDKERSK
101: SHRHKRHKNR DRKNGEGEGS SGPVKLSKFL GRDKDDGERR SAVSGKKIML KVDKSKEDKA AESKRNELLK FLNASFD

Best Arabidopsis Sequence Match ( AT5G27860.1 )
(BLAST)

001: MAASSSSSSS DVSSDSSDSH RRRKDRRHHR RNDRDRDSLK VRKKSRSTSK KRRRRQHSSD SSDSSYSDSS SESSDSEHEK SRRHKKHEKP KKAKDKERSK
101: SHRHKRHKNR ERKKGEGEGS SGPVKLSKFL NRDKDDGERR SAVSGKKILL KVDKSKEDKA AESKRNELLK FLNASFD

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - /.../Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). [Source:TAIR;Acc:AT5G27860]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.