Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 3
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d002857_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27860.1 | Zm00001d002857_P001 | AT5G53800.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES16140 | Sorghum | nucleus, plastid | 84.62 | 80.88 |
| TraesCS5A01G091500.1 | Wheat | nucleus, plastid | 74.36 | 76.72 |
| TraesCS5D01G103600.1 | Wheat | nucleus | 72.82 | 75.94 |
| TraesCS5B01G098000.1 | Wheat | nucleus, plastid | 71.79 | 75.68 |
| Os12t0554000-01 | Rice | nucleus | 64.62 | 64.29 |
| HORVU5Hr1G023980.1 | Barley | plastid | 74.36 | 63.6 |
| Solyc01g099930.2.1 | Tomato | nucleus, plastid | 48.21 | 53.41 |
| KRH68485 | Soybean | nucleus, plastid | 48.72 | 51.35 |
| CDX80615 | Canola | nucleus, plastid | 46.15 | 50.85 |
| Bra009939.1-P | Field mustard | nucleus, plastid | 45.13 | 50.57 |
| CDY66802 | Canola | nucleus, plastid | 45.13 | 50.57 |
| KRG96768 | Soybean | nucleus, plastid | 46.67 | 49.73 |
| AT5G27860.1 | Thale cress | nucleus | 43.59 | 48.02 |
Protein Annotations
| EnsemblPlants:Zm00001d023824_P002 | EnsemblPlants:Zm00001d023824_T002 | EnsemblPlantsGene:Zm00001d023824 | EntrezGene:100286351 | PANTHER:PTHR35760 | ProteinID:AQK40169.1 |
| SEG:seg | UniParc:UPI000221738C | UniProt:K7TJQ7 | MapMan:35.2 | : | : |
Description
Splicing factor%2C arginine/serine-rich 12
Coordinates
chr10:-:23507053..23509335
Molecular Weight (calculated)
22685.1 Da
IEP (calculated)
11.509
GRAVY (calculated)
-1.912
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MARSPAASSS SYTDSTGSSS DSGSSSSGID RRRRRHRHRS SRRKEGTSSS ALKARKDRRS RHKRRRHERE RRRSASDDDS YSSTSSYDSD REVSGRSRKH
101: KKSSRSRKFR ERERSKDRHH RRDKSKHKEK KESEHADGPV QLSKFLGRDK EKEEGTQRSA ISGKKIMMKL EKTKEDKAAE SKRNELLKFL NASYD
101: KKSSRSRKFR ERERSKDRHH RRDKSKHKEK KESEHADGPV QLSKFLGRDK EKEEGTQRSA ISGKKIMMKL EKTKEDKAAE SKRNELLKFL NASYD
001: MAASSSSSSS DVSSDSSDSH RRRKDRRHHR RNDRDRDSLK VRKKSRSTSK KRRRRQHSSD SSDSSYSDSS SESSDSEHEK SRRHKKHEKP KKAKDKERSK
101: SHRHKRHKNR ERKKGEGEGS SGPVKLSKFL NRDKDDGERR SAVSGKKILL KVDKSKEDKA AESKRNELLK FLNASFD
101: SHRHKRHKNR ERKKGEGEGS SGPVKLSKFL NRDKDDGERR SAVSGKKILL KVDKSKEDKA AESKRNELLK FLNASFD
Arabidopsis Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - /.../Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). [Source:TAIR;Acc:AT5G27860]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.