Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53800.1 | CDX68998 | AT4G33690.1 | 21798944 |
| AT5G53800.1 | CDX75374 | AT4G33690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003034.1-P | Field mustard | nucleus | 50.59 | 99.08 |
| CDY14351 | Canola | nucleus | 50.59 | 99.08 |
| VIT_19s0014g02960.t01 | Wine grape | cytosol | 6.32 | 75.0 |
| AT5G53800.1 | Thale cress | nucleus | 56.44 | 68.66 |
| PGSC0003DMT400039740 | Potato | nucleus | 40.52 | 54.06 |
| Solyc12g013790.1.1 | Tomato | nucleus | 40.05 | 53.77 |
| GSMUA_Achr11P... | Banana | nucleus | 40.52 | 51.8 |
| Os04t0530300-01 | Rice | nucleus | 41.45 | 49.58 |
| KXG26776 | Sorghum | nucleus | 39.58 | 49.56 |
| TraesCS2B01G389800.1 | Wheat | nucleus | 40.05 | 49.14 |
| TraesCS2D01G369000.1 | Wheat | nucleus | 39.81 | 49.13 |
| KRH22108 | Soybean | nucleus | 43.56 | 48.95 |
| TraesCS2A01G372800.1 | Wheat | nucleus | 39.58 | 48.84 |
| Zm00001d002857_P001 | Maize | nucleus | 38.41 | 47.67 |
| KRH27228 | Soybean | nucleus | 42.15 | 47.62 |
| VIT_19s0014g02940.t01 | Wine grape | extracellular | 7.26 | 34.83 |
Protein Annotations
| EnsemblPlants:CDY20218 | EnsemblPlantsGene:GSBRNA2T00010122001 | ncoils:Coil | ProteinID:CDY20218 | ProteinID:CDY20218.1 | SEG:seg |
| UniParc:UPI0004EEF4BF | UniProt:A0A078G6D9 | MapMan:35.2 | : | : | : |
Description
BnaC09g30210DBnaC09g30210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6D9]
Coordinates
chrLK032104:-:335298..338356
Molecular Weight (calculated)
50902.7 Da
IEP (calculated)
10.411
GRAVY (calculated)
-1.657
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSLLCFYQH WNSTLQIPYT KVFNILLPPH QLEKIRDVPS HSSNSSRFKL PVANLPPSTS PGWVEITHRR FREMGRDRDD SPPEKAKGDV EDKDYRRKSS
101: RRRIEKKSVE EEEDVNRRES RRKSKDGRDS DSGSGLESGS DSESEKEERR RSRKSRGKKK SDRRSRSRRS RRRYDDSSSS SESESESEYS SDYSDSESES
201: ESEDERRRRK RREREERDRK RRRREKEKKK RRKEKGVDGD SKKKKKKRKK EKKSEKAKKG AVTESWGKYG VIRETDMWNK RPEFTAWLLE VKEVNLESLP
301: PWEEKKMFKD FMEDHNTGTF TSKKYYDIDG YYRRKLEKEM KKGLKKAGKS ERTVFNDEEQ RRLEMQEARE KQKEEEVLAL KRSMEGGMAQ AMKEQARLKE
401: EMVYLYKIGD MEGAAAIQRR LDPDVPM
101: RRRIEKKSVE EEEDVNRRES RRKSKDGRDS DSGSGLESGS DSESEKEERR RSRKSRGKKK SDRRSRSRRS RRRYDDSSSS SESESESEYS SDYSDSESES
201: ESEDERRRRK RREREERDRK RRRREKEKKK RRKEKGVDGD SKKKKKKRKK EKKSEKAKKG AVTESWGKYG VIRETDMWNK RPEFTAWLLE VKEVNLESLP
301: PWEEKKMFKD FMEDHNTGTF TSKKYYDIDG YYRRKLEKEM KKGLKKAGKS ERTVFNDEEQ RRLEMQEARE KQKEEEVLAL KRSMEGGMAQ AMKEQARLKE
401: EMVYLYKIGD MEGAAAIQRR LDPDVPM
001: MGSDRDGAPP ENTKREVEDR DIRRKSSREK PSGSGKDSGE EKDVSRRRES KRRTKDGNDS GSESGLESGS ESEKEERRRS RKDRGKRKSD RKSSRSRRRR
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M
Arabidopsis Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G53800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.