Factsheet for AT5G53800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003034.1-P	Field mustard	nucleus	54.99	88.53
CDY14351	Canola	nucleus	54.99	88.53
VIT_19s0014g02960.t01	Wine grape	cytosol	7.69	75.0
CDY20218	Canola	nucleus	68.66	56.44
Solyc12g013790.1.1	Tomato	nucleus	50.43	55.66
PGSC0003DMT400039740	Potato	nucleus	49.0	53.75
GSMUA_Achr11P...	Banana	nucleus	48.72	51.2
KXG26776	Sorghum	nucleus	47.86	49.27
TraesCS2B01G389800.1	Wheat	nucleus	48.72	49.14
TraesCS2A01G372800.1	Wheat	nucleus	48.43	49.13
TraesCS2D01G369000.1	Wheat	nucleus	48.43	49.13
Os04t0530300-01	Rice	nucleus	49.57	48.74
Zm00001d002857_P001	Maize	nucleus	47.29	48.26
KRH22108	Soybean	nucleus	49.0	45.26
KRH27228	Soybean	nucleus	47.29	43.92
VIT_19s0014g02940.t01	Wine grape	extracellular	8.26	32.58

Protein Annotations

MapMan:35.2	EntrezGene:835461	UniProt:A0A178UIL1	ProteinID:AED96408.1	ArrayExpress:AT5G53800	EnsemblPlantsGene:AT5G53800
RefSeq:AT5G53800	TAIR:AT5G53800	RefSeq:AT5G53800-TAIR-G	EnsemblPlants:AT5G53800.1	TAIR:AT5G53800.1	Unigene:At.6984
ncoils:Coil	UniProt:F4JXC2	GO:GO:0003674	GO:GO:0005198	GO:GO:0005575	GO:GO:0008150
GO:GO:0019028	RefSeq:NP_568799.1	ProteinID:OAO93445.1	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	UniParc:UPI0000162871	SEG:seg

Description

unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G53800]

Coordinates

chr5:+:21848035..21850111

Molecular Weight (calculated)

41788.8 Da

IEP (calculated)

10.376

GRAVY (calculated)

-1.876

Length

351 amino acids

Sequence
(BLAST)

001: MGSDRDGAPP ENTKREVEDR DIRRKSSREK PSGSGKDSGE EKDVSRRRES KRRTKDGNDS GSESGLESGS ESEKEERRRS RKDRGKRKSD RKSSRSRRRR
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.