Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_03s0088g01000.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53800.1 | VIT_03s0088g01000.t01 | AT4G33690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003034.1-P | Field mustard | nucleus | 32.58 | 13.3 |
| CDY14351 | Canola | nucleus | 32.58 | 13.3 |
| VIT_19s0014g02930.t01 | Wine grape | nucleus | 42.7 | 11.55 |
| KXG26776 | Sorghum | nucleus | 39.33 | 10.26 |
| GSMUA_Achr11P... | Banana | nucleus | 38.2 | 10.18 |
| Zm00001d002857_P001 | Maize | nucleus | 39.33 | 10.17 |
| TraesCS2A01G372800.1 | Wheat | nucleus | 37.08 | 9.54 |
| TraesCS2D01G369000.1 | Wheat | nucleus | 37.08 | 9.54 |
| TraesCS2B01G389800.1 | Wheat | nucleus | 37.08 | 9.48 |
| Os04t0530300-01 | Rice | nucleus | 37.08 | 9.24 |
| AT5G53800.1 | Thale cress | nucleus | 32.58 | 8.26 |
| CDY20218 | Canola | nucleus | 34.83 | 7.26 |
| VIT_10s0003g03350.t01 | Wine grape | cytosol | 3.37 | 3.57 |
| VIT_10s0003g05270.t01 | Wine grape | cytosol | 3.37 | 3.57 |
| VIT_19s0014g02960.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_19s0014g02940 | EMBL:FN595229 | EnsemblPlants:VIT_19s0014g02940.t01 | EnsemblPlantsGene:VIT_19s0014g02940 | PANTHER:PTHR34689 | ProteinID:CBI20323 |
| ProteinID:CBI20323.3 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0001BE1CC1 | UniProt:E0CSM4 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr19:+:3038731..3047932
Molecular Weight (calculated)
10590.9 Da
IEP (calculated)
8.499
GRAVY (calculated)
0.022
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MRHLKLIFLS FFLGFLCFSS YVNVRDFPFY FGENGVQVTN FTSSMSLGVL LKIWSHMNKR PEFTAWLAEI KQVNLESLPN WEEKQMFKE
001: MGSDRDGAPP ENTKREVEDR DIRRKSSREK PSGSGKDSGE EKDVSRRRES KRRTKDGNDS GSESGLESGS ESEKEERRRS RKDRGKRKSD RKSSRSRRRR
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M
Arabidopsis Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G53800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.