Factsheet for VIT_19s0014g02930.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g02960.t01	Wine grape	cytosol	10.64	97.22
VIT_10s0003g05270.t01	Wine grape	cytosol	19.15	75.0
VIT_10s0003g03350.t01	Wine grape	cytosol	18.54	72.62
Solyc12g013790.1.1	Tomato	nucleus	60.18	62.26
PGSC0003DMT400039740	Potato	nucleus	58.36	60.0
GSMUA_Achr11P...	Banana	nucleus	60.79	59.88
KRH22108	Soybean	nucleus	63.22	54.74
KRH27228	Soybean	nucleus	61.7	53.7
KXG26776	Sorghum	nucleus	55.32	53.37
Os04t0530300-01	Rice	nucleus	55.93	51.54
Zm00001d002857_P001	Maize	nucleus	53.19	50.87
TraesCS2A01G372800.1	Wheat	nucleus	53.5	50.87
TraesCS2D01G369000.1	Wheat	nucleus	53.5	50.87
TraesCS2B01G389800.1	Wheat	nucleus	53.5	50.57
VIT_19s0014g02940.t01	Wine grape	extracellular	11.55	42.7

Protein Annotations

ArrayExpress:VIT_19s0014g02930	EMBL:FN595229	EnsemblPlants:VIT_19s0014g02930.t01	EnsemblPlantsGene:VIT_19s0014g02930	EntrezGene:100243517	EntrezGene:LOC100243517
ncoils:Coil	PANTHER:PTHR34689	ProteinID:CCB46354	ProteinID:CCB46354.1	RefSeq:XP_002282222	RefSeq:XP_002282222.1
SEG:seg	unigene:Vvi.5351	UniParc:UPI00015C7B4F	UniProt:F6H258	wikigene:100243517	wikigene:LOC100243517
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:3026807..3035688

Molecular Weight (calculated)

39724.2 Da

IEP (calculated)

10.445

GRAVY (calculated)

-1.982

Length

329 amino acids

Sequence
(BLAST)

001: MAKDRNGDEK REISEKEEEN ERKPKRKPRE NSYSGSEEER NHNSTKKTKR NSKRKSRKRY SDEDSSPSSD ADSKDSHSDS DSASESVTGS SESESGSKSE
101: SEEERRRRKR RERKRRRERE EERERKRRRR EKEKRRRKRE KEEERRKKKK KKKKEKEGAK KGAVTNSWGK YGIIRESDMW NKRPEFTAWL AEIKQVNLES
201: LPNWEEKQMF KEFMEDHNTA TFTSKKYYNI DAYYRQKMER EMKKGSKKAL ETERTVFNDE EQRRLELQRE RERYKEVQVE ELKRSMQSGM AQAMKEQAQL
301: REEMAYQYKV GNSEAAAAIQ RRLDPDVAM

Best Arabidopsis Sequence Match ( AT5G53800.1 )
(BLAST)

001: MGSDRDGAPP ENTKREVEDR DIRRKSSREK PSGSGKDSGE EKDVSRRRES KRRTKDGNDS GSESGLESGS ESEKEERRRS RKDRGKRKSD RKSSRSRRRR
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M

Arabidopsis Description

unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G53800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.