Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_03s0088g01000.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53800.1 | VIT_03s0088g01000.t01 | AT4G33690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_10s0003g05270.t01 | Wine grape | cytosol | 97.22 | 41.67 |
| VIT_10s0003g03350.t01 | Wine grape | cytosol | 94.44 | 40.48 |
| Bra003034.1-P | Field mustard | nucleus | 75.0 | 12.39 |
| CDY14351 | Canola | nucleus | 75.0 | 12.39 |
| VIT_19s0014g02930.t01 | Wine grape | nucleus | 97.22 | 10.64 |
| GSMUA_Achr11P... | Banana | nucleus | 86.11 | 9.28 |
| AT5G53800.1 | Thale cress | nucleus | 75.0 | 7.69 |
| CDY20218 | Canola | nucleus | 75.0 | 6.32 |
| Os04t0530300-01 | Rice | nucleus | 52.78 | 5.32 |
| KXG26776 | Sorghum | nucleus | 50.0 | 5.28 |
| Zm00001d002857_P001 | Maize | nucleus | 50.0 | 5.23 |
| TraesCS2A01G372800.1 | Wheat | nucleus | 47.22 | 4.91 |
| TraesCS2D01G369000.1 | Wheat | nucleus | 47.22 | 4.91 |
| TraesCS2B01G389800.1 | Wheat | nucleus | 47.22 | 4.89 |
| VIT_19s0014g02940.t01 | Wine grape | extracellular | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_19s0014g02960 | EMBL:FN595229 | EnsemblPlants:VIT_19s0014g02960.t01 | EnsemblPlantsGene:VIT_19s0014g02960 | PANTHER:PTHR34689 | ProteinID:CCB46356 |
| ProteinID:CCB46356.1 | RefSeq:XP_003634647 | RefSeq:XP_003634647.1 | UniParc:UPI000210A06A | UniProt:F6H260 | MapMan:35.2 |
Description
No Description!
Coordinates
chr19:+:3054934..3055587
Molecular Weight (calculated)
4173.0 Da
IEP (calculated)
4.773
GRAVY (calculated)
-0.633
Length
36 amino acids
Sequence
(BLAST)
(BLAST)
1: MKEQAQLREE MAYQYKVGNF EAAAAIQRRL DPDVAM
001: MGSDRDGAPP ENTKREVEDR DIRRKSSREK PSGSGKDSGE EKDVSRRRES KRRTKDGNDS GSESGLESGS ESEKEERRRS RKDRGKRKSD RKSSRSRRRR
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M
Arabidopsis Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G53800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.