Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G372800.1 | Wheat | nucleus | 97.13 | 97.69 |
| TraesCS2D01G369000.1 | Wheat | nucleus | 96.55 | 97.11 |
| KXG26776 | Sorghum | nucleus | 77.3 | 78.89 |
| Os04t0530300-01 | Rice | nucleus | 77.87 | 75.91 |
| Zm00001d002857_P001 | Maize | nucleus | 73.85 | 74.71 |
| Bra003034.1-P | Field mustard | nucleus | 38.22 | 61.01 |
| CDY14351 | Canola | nucleus | 38.22 | 61.01 |
| PGSC0003DMT400039740 | Potato | nucleus | 50.86 | 55.31 |
| Solyc12g013790.1.1 | Tomato | nucleus | 50.29 | 55.03 |
| GSMUA_Achr11P... | Banana | nucleus | 52.59 | 54.79 |
| VIT_19s0014g02930.t01 | Wine grape | nucleus | 50.57 | 53.5 |
| VIT_10s0003g05270.t01 | Wine grape | cytosol | 12.07 | 50.0 |
| AT5G53800.1 | Thale cress | nucleus | 49.14 | 48.72 |
| VIT_10s0003g03350.t01 | Wine grape | cytosol | 11.49 | 47.62 |
| VIT_19s0014g02960.t01 | Wine grape | cytosol | 4.89 | 47.22 |
| KRH27228 | Soybean | nucleus | 50.29 | 46.3 |
| KRH22108 | Soybean | nucleus | 50.29 | 46.05 |
| CDY20218 | Canola | nucleus | 49.14 | 40.05 |
| VIT_19s0014g02940.t01 | Wine grape | extracellular | 9.48 | 37.08 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G389800.1 | EnsemblPlantsGene:TraesCS2B01G389800 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0006606 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0061608 | InterPro:IPR002652 | InterPro:Importin-a_IBB | ncoils:Coil | PANTHER:PTHR34689 |
| PFscan:PS51214 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2B:+:553618792..553623525
Molecular Weight (calculated)
41162.9 Da
IEP (calculated)
10.467
GRAVY (calculated)
-1.768
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKDENGSAP DGAGKEEGEA AAAAARSRSR SKSLEAAEEE EGRSKGRRHR GHHGKSNRRG EEEESESSDE DSGERRKRRR KEKERRRRRR RSRSESSGSE
101: SESESESSYS GSSAESESES ESEEERRRRR RRRRKEKEEE ERRRRRKEKE KRKRKEKERE KDKKKKKRKD EKKDLGKKAA VTNSWGKYGI IREVDMWNKR
201: PEFTAWLLEV KQVNLEALAN WEEKQMFKEF MEDHNTATFP SKKYYDLDAY HQRMMEKEKR NGLKNAGSVA VRTVFNDEEV RRLELLQERE RRKEEEVTAL
301: KRSMQTGMAQ AMKQQSLLRE EMMLQYKLGN FEAAAAIQKR LDPDAPPQ
101: SESESESSYS GSSAESESES ESEEERRRRR RRRRKEKEEE ERRRRRKEKE KRKRKEKERE KDKKKKKRKD EKKDLGKKAA VTNSWGKYGI IREVDMWNKR
201: PEFTAWLLEV KQVNLEALAN WEEKQMFKEF MEDHNTATFP SKKYYDLDAY HQRMMEKEKR NGLKNAGSVA VRTVFNDEEV RRLELLQERE RRKEEEVTAL
301: KRSMQTGMAQ AMKQQSLLRE EMMLQYKLGN FEAAAAIQKR LDPDAPPQ
001: MGSDRDGAPP ENTKREVEDR DIRRKSSREK PSGSGKDSGE EKDVSRRRES KRRTKDGNDS GSESGLESGS ESEKEERRRS RKDRGKRKSD RKSSRSRRRR
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M
Arabidopsis Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G53800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.