Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G216700.1 | Wheat | nucleus | 91.27 | 90.72 |
| TraesCS7A01G111400.1 | Wheat | nucleus | 68.67 | 89.41 |
| TraesCS7B01G009300.1 | Wheat | nucleus | 68.37 | 87.64 |
| HORVU7Hr1G023920.2 | Barley | cytosol, nucleus | 51.81 | 86.0 |
| HORVU7Hr1G023790.1 | Barley | cytosol, mitochondrion, nucleus | 19.28 | 78.05 |
| EER96069 | Sorghum | nucleus | 52.71 | 68.63 |
| EER97413 | Sorghum | nucleus | 51.81 | 67.45 |
| Zm00001d019181_P001 | Maize | nucleus | 51.81 | 66.93 |
| Os07t0213400-01 | Rice | nucleus, plastid | 52.11 | 65.04 |
| Zm00001d021873_P001 | Maize | nucleus | 49.4 | 63.57 |
| HORVU7Hr1G023780.5 | Barley | cytosol | 22.59 | 62.5 |
| TraesCS7A01G405900.1 | Wheat | nucleus | 43.07 | 56.97 |
| KRH50572 | Soybean | cytosol | 17.17 | 54.29 |
| Bra001231.1-P | Field mustard | nucleus | 33.13 | 51.4 |
| CDX74067 | Canola | nucleus | 32.23 | 47.98 |
| CDX68998 | Canola | nucleus | 31.02 | 41.53 |
| PGSC0003DMT400013080 | Potato | nucleus | 32.23 | 41.47 |
| CDY43847 | Canola | nucleus | 23.49 | 40.62 |
| AT4G33690.1 | Thale cress | nucleus | 29.82 | 40.24 |
| Bra011462.1-P | Field mustard | nucleus | 30.42 | 39.76 |
| CDX75374 | Canola | nucleus | 30.12 | 39.37 |
| KRH10674 | Soybean | nucleus | 34.94 | 38.67 |
| CDY08019 | Canola | mitochondrion, nucleus | 32.83 | 37.59 |
| KRH21674 | Soybean | nucleus | 32.53 | 36.61 |
| Bra023945.1-P | Field mustard | cytosol | 29.82 | 35.48 |
| Solyc01g106560.2.1 | Tomato | nucleus | 31.93 | 34.53 |
| GSMUA_Achr6P16520_001 | Banana | nucleus | 25.0 | 33.33 |
| CDY48230 | Canola | cytosol, extracellular, plastid | 10.84 | 32.43 |
| CDY26345 | Canola | cytosol, nucleus, plastid | 28.92 | 32.0 |
| VIT_03s0088g01000.t01 | Wine grape | nucleus | 36.14 | 28.57 |
| CDY71888 | Canola | extracellular, golgi | 25.6 | 27.69 |
| CDY16047 | Canola | golgi, plasma membrane | 22.29 | 24.58 |
| CDY48061 | Canola | plastid | 24.1 | 23.46 |
| CDX74406 | Canola | endoplasmic reticulum | 16.27 | 23.08 |
| CDY22755 | Canola | extracellular | 8.13 | 22.13 |
| CDY48229 | Canola | cytosol, mitochondrion | 9.34 | 20.39 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G215300.3 | EnsemblPlantsGene:TraesCS5A01G215300 | ncoils:Coil | PANTHER:PTHR34684 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr5A:-:430637567..430640228
Molecular Weight (calculated)
38487.0 Da
IEP (calculated)
10.519
GRAVY (calculated)
-1.403
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLDTENRLA SLLLEEARRL QSEADREGVH AYLQKPNVRH RPNSRFLTAT VRGVQQDGLK ATSPSSNAIL SPSKIKLSSL RLKQTLRAVA HQQSPTEVTM
101: TRTPHGRLPF SCPTEHDTSI RMPNKSTFNT AQYFPANRVV EVDEMWRARE KELELESKLK RRNKERGDSR GEKRKGDSRN MSSSSKIEEG TAYNSSYSDQ
201: DDGLGDDEVE KFLHSRVKRG RGAVGSRMDE PGPYLKDSSH CRDKEPSPDI RLEEKWERRV QGPERPLFLR SKSLDDCWHG ETLDDNKPSS SSEAHRKKEN
301: KKERRSEKKE RKDKKKAKHR HRHHHHKSRR RE
101: TRTPHGRLPF SCPTEHDTSI RMPNKSTFNT AQYFPANRVV EVDEMWRARE KELELESKLK RRNKERGDSR GEKRKGDSRN MSSSSKIEEG TAYNSSYSDQ
201: DDGLGDDEVE KFLHSRVKRG RGAVGSRMDE PGPYLKDSSH CRDKEPSPDI RLEEKWERRV QGPERPLFLR SKSLDDCWHG ETLDDNKPSS SSEAHRKKEN
301: KKERRSEKKE RKDKKKAKHR HRHHHHKSRR RE
001: MDLETENRIA SILLREAAEL RRQAEKDGVR AYLEKPNVRH RPNSRFLTAT VLGVQQANKA VETNEMWSLR SKEIEFGERL KRKSRDESSN GQSEQNNRRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD
Arabidopsis Description
At4g33690 [Source:UniProtKB/TrEMBL;Acc:Q6NPE9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.