Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G038000.1 | Wheat | nucleus | 90.31 | 87.19 |
| TraesCS5D01G045400.1 | Wheat | nucleus | 88.78 | 85.71 |
| TraesCS7A01G546500.1 | Wheat | nucleus | 88.27 | 85.22 |
| TraesCS5B01G039500.1 | Wheat | nucleus | 87.24 | 84.24 |
| HORVU5Hr1G009530.1 | Barley | nucleus | 86.22 | 79.34 |
| KXG23999 | Sorghum | nucleus | 87.76 | 79.26 |
| Os12t0614000-01 | Rice | nucleus | 85.2 | 75.91 |
| KRH06516 | Soybean | nucleus | 73.47 | 64.86 |
| KRH47954 | Soybean | nucleus | 71.94 | 63.23 |
| GSMUA_Achr1P04140_001 | Banana | nucleus | 65.82 | 62.02 |
| Solyc09g020010.1.1 | Tomato | nucleus | 61.22 | 61.54 |
| GSMUA_Achr4P31560_001 | Banana | nucleus | 70.92 | 61.23 |
| Solyc06g007660.1.1 | Tomato | nucleus | 64.29 | 61.16 |
| GSMUA_Achr9P19370_001 | Banana | nucleus | 67.86 | 61.01 |
| PGSC0003DMT400053217 | Potato | nucleus | 63.78 | 60.68 |
| AT5G19480.3 | Thale cress | nucleus | 63.78 | 60.39 |
| CDY14004 | Canola | nucleus | 62.76 | 60.29 |
| PGSC0003DMT400074614 | Potato | nucleus | 47.96 | 60.26 |
| CDX97177 | Canola | nucleus | 66.33 | 59.91 |
| CDX69696 | Canola | nucleus | 66.84 | 59.55 |
| CDX92526 | Canola | nucleus | 61.73 | 59.31 |
| Bra008906.1-P | Field mustard | nucleus | 66.33 | 59.09 |
| Zm00001d031065_P001 | Maize | cytosol | 79.08 | 58.94 |
| PGSC0003DMT400071143 | Potato | nucleus | 65.82 | 58.64 |
| Solyc06g082900.2.1 | Tomato | nucleus | 65.82 | 58.64 |
| CDX70456 | Canola | nucleus | 65.82 | 58.37 |
| CDX78474 | Canola | nucleus | 65.31 | 57.92 |
| Bra006148.1-P | Field mustard | nucleus | 65.31 | 57.92 |
| VIT_00s0174g00320.t01 | Wine grape | nucleus | 45.41 | 57.79 |
| AT5G12230.1 | Thale cress | nucleus | 63.78 | 56.56 |
| Bra002239.1-P | Field mustard | nucleus | 60.71 | 56.13 |
| KRH51345 | Soybean | nucleus | 59.18 | 54.21 |
| TraesCS5A01G375300.1 | Wheat | mitochondrion | 68.88 | 54.0 |
| KRH60658 | Soybean | nucleus | 61.22 | 51.06 |
| GSMUA_Achr7P07140_001 | Banana | nucleus | 65.82 | 45.1 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G090300.1 | EnsemblPlantsGene:TraesCS5A01G090300 | PANTHER:PTHR22536 | PANTHER:PTHR22536:SF2 | SEG:seg | MapMan:15.3.3.1.6 |
Description
No Description!
Coordinates
chr5A:-:121719946..121720790
Molecular Weight (calculated)
22684.0 Da
IEP (calculated)
10.387
GRAVY (calculated)
-1.421
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLSISGPRE LTGAVDLRSQ YKLQPHHDFF CKRPLPLAIS DTHYLHNVVG DTDIRKGEGM KLDQLVQYLR DKPAYIQPFD METLGQAFQL RETAPVDLPF
101: QSTGIPTISG KPKSESKDKA KKHKKKDKDK DREHKKHKHR HKDRSKDDKD KDKKKDKKHH EKKRKHEGTE DSADVHKHKK SKHKSSKIDE MGNALS
101: QSTGIPTISG KPKSESKDKA KKHKKKDKDK DREHKKHKHR HKDRSKDDKD KDKKKDKKHH EKKRKHEGTE DSADVHKHKK SKHKSSKIDE MGNALS
001: MESESVKFGG PRELGGALDL ITQYKLLPHH EFFCKRSLPE SLSDAHYLHN LVGDTEIRKG EGMQLDQLIP NASLSSRDTN ARIQPFVLDE LKEAFELNDT
101: APVELPPAEK GAPTTVSKSK SESKDKDRKH RKHKDKKEKD REHKKHKHKH KDRIKDKDKD KDRDKKKEKS GHHDKKRKNN GTEDADDVQR HKKSKHKSSK
201: LDEMGAM
101: APVELPPAEK GAPTTVSKSK SESKDKDRKH RKHKDKKEKD REHKKHKHKH KDRIKDKDKD KDRDKKKEKS GHHDKKRKNN GTEDADDVQR HKKSKHKSSK
201: LDEMGAM
Arabidopsis Description
MED19BProbable mediator of RNA polymerase II transcription subunit 19b [Source:UniProtKB/Swiss-Prot;Acc:Q6NQD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.