Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P19370_001 | Banana | nucleus | 86.06 | 82.11 |
| GSMUA_Achr4P31560_001 | Banana | nucleus | 80.77 | 74.01 |
| Os12t0614000-01 | Rice | nucleus | 75.48 | 71.36 |
| PGSC0003DMT400053217 | Potato | nucleus | 69.71 | 70.39 |
| KXG23999 | Sorghum | nucleus | 73.08 | 70.05 |
| Solyc06g007660.1.1 | Tomato | nucleus | 69.23 | 69.9 |
| Solyc09g020010.1.1 | Tomato | nucleus | 65.38 | 69.74 |
| TraesCS7B01G469600.1 | Wheat | nucleus | 66.83 | 68.47 |
| TraesCS5A01G038000.1 | Wheat | nucleus | 66.83 | 68.47 |
| TraesCS7D01G532700.1 | Wheat | nucleus | 66.35 | 67.98 |
| TraesCS5D01G045400.1 | Wheat | nucleus | 66.35 | 67.98 |
| TraesCS7A01G546500.1 | Wheat | nucleus | 66.35 | 67.98 |
| TraesCS5B01G039500.1 | Wheat | nucleus | 65.87 | 67.49 |
| KRH06516 | Soybean | nucleus | 71.63 | 67.12 |
| KRH47954 | Soybean | nucleus | 71.63 | 66.82 |
| TraesCS5A01G090300.1 | Wheat | nucleus | 62.02 | 65.82 |
| HORVU5Hr1G009530.1 | Barley | nucleus | 67.31 | 65.73 |
| Solyc06g082900.2.1 | Tomato | nucleus | 69.23 | 65.45 |
| PGSC0003DMT400071143 | Potato | nucleus | 69.23 | 65.45 |
| Zm00001d032361_P001 | Maize | nucleus | 65.38 | 65.07 |
| KXG24984 | Sorghum | nucleus | 67.79 | 64.98 |
| CDY14004 | Canola | nucleus | 63.46 | 64.71 |
| Os03t0641700-02 | Rice | nucleus | 67.31 | 63.64 |
| PGSC0003DMT400074614 | Potato | nucleus | 47.12 | 62.82 |
| AT5G19480.3 | Thale cress | nucleus | 62.5 | 62.8 |
| CDX92526 | Canola | nucleus | 61.54 | 62.75 |
| AT5G12230.1 | Thale cress | nucleus | 65.87 | 61.99 |
| CDX69696 | Canola | nucleus | 65.38 | 61.82 |
| VIT_00s0174g00320.t01 | Wine grape | nucleus | 45.67 | 61.69 |
| CDX78474 | Canola | nucleus | 65.38 | 61.54 |
| Bra006148.1-P | Field mustard | nucleus | 65.38 | 61.54 |
| Bra008906.1-P | Field mustard | nucleus | 64.9 | 61.36 |
| CDX97177 | Canola | nucleus | 63.94 | 61.29 |
| Bra002239.1-P | Field mustard | nucleus | 62.02 | 60.85 |
| CDX70456 | Canola | nucleus | 64.42 | 60.63 |
| GSMUA_Achr7P07140_001 | Banana | nucleus | 82.69 | 60.14 |
| KRH51345 | Soybean | nucleus | 61.54 | 59.81 |
| TraesCS5D01G384900.1 | Wheat | nucleus | 64.9 | 57.45 |
| TraesCS5B01G377400.1 | Wheat | nucleus | 65.87 | 57.32 |
| TraesCS5A01G375300.1 | Wheat | mitochondrion | 67.31 | 56.0 |
| KRH60658 | Soybean | nucleus | 62.98 | 55.74 |
| Zm00001d031065_P001 | Maize | cytosol | 64.42 | 50.95 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P04140_001 | EnsemblPlants:GSMUA_Achr1T04140_001 | EnsemblPlantsGene:GSMUA_Achr1G04140_001 | PANTHER:PTHR22536 | PANTHER:PTHR22536:SF2 | SEG:seg |
| UniParc:UPI000296645F | UniProt:M0RWX2 | MapMan:15.3.3.1.6 | : | : | : |
Description
nucleolar protein NOP5, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G04140_001]
Coordinates
chr1:+:3452043..3453267
Molecular Weight (calculated)
23911.3 Da
IEP (calculated)
10.486
GRAVY (calculated)
-1.443
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPESKKFGR GPRELTGAAD LINRYKLSAH HDFFCKRILP LSISDTHYLH NVVGDTEIRK GEGMELGQLF QSAPYLRETT AQIQQFNLDL LGQAFELRDT
101: APIDLPLSEK GTPTIPGKSK GDSKDKGRKH KKHKVKDREK DKEHKKHKRR HKDRSKDKDR EKKKDKSGHH DSGGDHSKKH HEKKRKHDGN EDSVDNHKHK
201: KSKVVGMV
101: APIDLPLSEK GTPTIPGKSK GDSKDKGRKH KKHKVKDREK DKEHKKHKRR HKDRSKDKDR EKKKDKSGHH DSGGDHSKKH HEKKRKHDGN EDSVDNHKHK
201: KSKVVGMV
001: MEPERLKFGG PRELCGAADL ISQFKLVQHH EFFCKKSLPV SLSDSHYLHN VVGDTEIRKG EGMQLDQLIE SISQSRETNI RIQPFDIDEL QESFQLNDMT
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G
Arabidopsis Description
MED19AMediator of RNA polymerase II transcription subunit 19a [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.