Factsheet for Zm00001d032361_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24984	Sorghum	nucleus	97.13	93.55
Os03t0641700-02	Rice	nucleus	80.38	76.36
TraesCS5D01G384900.1	Wheat	nucleus	80.86	71.91
TraesCS5B01G377400.1	Wheat	nucleus	80.38	70.29
TraesCS5A01G375300.1	Wheat	mitochondrion	82.3	68.8
GSMUA_Achr1P04140_001	Banana	nucleus	65.07	65.38
Solyc09g020010.1.1	Tomato	nucleus	59.81	64.1
Solyc06g007660.1.1	Tomato	nucleus	61.24	62.14
GSMUA_Achr4P31560_001	Banana	nucleus	67.46	62.11
GSMUA_Achr9P19370_001	Banana	nucleus	64.11	61.47
PGSC0003DMT400053217	Potato	nucleus	60.29	61.16
KRH06516	Soybean	nucleus	63.64	59.91
KRH47954	Soybean	nucleus	62.2	58.3
Solyc06g082900.2.1	Tomato	nucleus	60.77	57.73
PGSC0003DMT400071143	Potato	nucleus	60.29	57.27
CDX78474	Canola	nucleus	59.81	56.56
Bra006148.1-P	Field mustard	nucleus	59.81	56.56
AT5G12230.1	Thale cress	nucleus	59.33	56.11
CDX70456	Canola	nucleus	59.33	56.11
CDY14004	Canola	nucleus	54.55	55.88
AT5G19480.3	Thale cress	nucleus	55.02	55.56
CDX69696	Canola	nucleus	58.37	55.45
CDX92526	Canola	nucleus	54.07	55.39
CDX97177	Canola	nucleus	57.42	55.3
PGSC0003DMT400074614	Potato	nucleus	41.15	55.13
KRH51345	Soybean	nucleus	55.98	54.67
Bra008906.1-P	Field mustard	nucleus	57.42	54.55
VIT_00s0174g00320.t01	Wine grape	nucleus	40.19	54.55
Bra002239.1-P	Field mustard	nucleus	54.55	53.77
Zm00001d031065_P001	Maize	cytosol	66.51	52.85
KRH60658	Soybean	nucleus	56.46	50.21
GSMUA_Achr7P07140_001	Banana	nucleus	64.11	46.85

Protein Annotations

EnsemblPlants:Zm00001d032361_P001	EnsemblPlants:Zm00001d032361_T001	EnsemblPlantsGene:Zm00001d032361	ncoils:Coil	PANTHER:PTHR22536	PANTHER:PTHR22536:SF2
ProteinID:ONM04927.1	SEG:seg	UniParc:UPI0008444BC1	UniProt:A0A1D6KQ83	MapMan:15.3.3.1.6	:

Description

Probable mediator of RNA polymerase II transcription subunit 19b

Coordinates

chr1:+:223971687..223976147

Molecular Weight (calculated)

23909.4 Da

IEP (calculated)

10.447

GRAVY (calculated)

-1.412

Length

209 amino acids

Sequence
(BLAST)

001: MISFGISGPR ELSGAVDLIS RYKLLNHHSF FCKKPLPLAI SDTNYLNNVV GDTEIRKGEG MELDQLFQNS CSSEKTAYIQ PFDMETLGQA FQLRETAPVD
101: LPSAEKGTPT ISGKSKVKSK DKVKKHKKHK EKDRDKEKEQ KKHKHRHKDR SKDKDKDKDK DKEKKKDKSG NHDLGGDHSK KHEKKRKQEV TGSSANVQNH
201: KKTQKHKIQ

Best Arabidopsis Sequence Match ( AT5G12230.1 )
(BLAST)

001: MEPERLKFGG PRELCGAADL ISQFKLVQHH EFFCKKSLPV SLSDSHYLHN VVGDTEIRKG EGMQLDQLIE SISQSRETNI RIQPFDIDEL QESFQLNDMT
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G

Arabidopsis Description

MED19AMediator of RNA polymerase II transcription subunit 19a [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.