Factsheet for Os03t0641700-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24984	Sorghum	nucleus	80.45	81.57
Zm00001d032361_P001	Maize	nucleus	76.36	80.38
TraesCS5D01G384900.1	Wheat	nucleus	80.45	75.32
Os12t0614000-01	Rice	nucleus	74.55	74.55
TraesCS5B01G377400.1	Wheat	nucleus	80.91	74.48
TraesCS5A01G375300.1	Wheat	mitochondrion	80.91	71.2
Solyc09g020010.1.1	Tomato	nucleus	60.0	67.69
GSMUA_Achr1P04140_001	Banana	nucleus	63.64	67.31
Solyc06g007660.1.1	Tomato	nucleus	61.82	66.02
PGSC0003DMT400053217	Potato	nucleus	60.91	65.05
GSMUA_Achr4P31560_001	Banana	nucleus	66.82	64.76
GSMUA_Achr9P19370_001	Banana	nucleus	61.82	62.39
KRH06516	Soybean	nucleus	62.27	61.71
KRH47954	Soybean	nucleus	60.91	60.09
PGSC0003DMT400071143	Potato	nucleus	59.55	59.55
Solyc06g082900.2.1	Tomato	nucleus	59.55	59.55
KRH51345	Soybean	nucleus	57.27	58.88
PGSC0003DMT400074614	Potato	nucleus	40.45	57.05
Bra006148.1-P	Field mustard	nucleus	57.27	57.01
CDX78474	Canola	nucleus	57.27	57.01
CDX97177	Canola	nucleus	55.91	56.68
CDX70456	Canola	nucleus	56.36	56.11
CDX69696	Canola	nucleus	55.91	55.91
AT5G12230.1	Thale cress	nucleus	55.91	55.66
Bra008906.1-P	Field mustard	nucleus	55.45	55.45
CDY14004	Canola	nucleus	51.36	55.39
VIT_00s0174g00320.t01	Wine grape	nucleus	38.64	55.19
CDX92526	Canola	nucleus	50.91	54.9
AT5G19480.3	Thale cress	nucleus	50.91	54.11
Bra002239.1-P	Field mustard	nucleus	51.82	53.77
KRH60658	Soybean	nucleus	57.27	53.62
GSMUA_Achr7P07140_001	Banana	nucleus	63.64	48.95

Protein Annotations

MapMan:15.3.3.1.6	EntrezGene:4333548	ProteinID:AAT85274.1	ProteinID:ABF97838.1	EMBL:AK070760	ProteinID:BAF12662.1
ProteinID:BAS85437.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0008134
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016592	GO:GO:0045944
EnsemblPlantsGene:Os03g0641700	EnsemblPlants:Os03t0641700-02	PANTHER:PTHR22536	PANTHER:PTHR22536:SF2	UniProt:Q6AST9	UniParc:UPI0000401DD0
RefSeq:XP_015633118.1	RefSeq:XP_015633119.1	RefSeq:XP_015633120.1	SEG:seg	:	:

Description

Mediator complex protein OsMED19b, Mediator 19_1Similar to predicted protein. (Os03t0641700-01);Conserved hypothetical protein. (Os03t0641700-02)

Coordinates

chr3:+:24727408..24732318

Molecular Weight (calculated)

25510.3 Da

IEP (calculated)

10.486

GRAVY (calculated)

-1.530

Length

220 amino acids

Sequence
(BLAST)

001: MSGFNRMGSD GNFGKGPREL TGAVDLISRY KLLNHHSFFC KKPLPLAISD TNYLHNVVGD TEIRKGEGME LDQLFQDAYL REKTSYIQPF DMETLGQAFQ
101: LRETAPIDLP SAEKGTPTIS GKSKIKSKDK VKKHKRHKEK DKDKYKDQKK HKHRHKDRSK DKEKEKEKEK EKEKKKDKSA HHDSGADRSK KHHEKKRKQE
201: GLEDLASGHN PKKVQKRKNQ

Best Arabidopsis Sequence Match ( AT5G12230.1 )
(BLAST)

001: MEPERLKFGG PRELCGAADL ISQFKLVQHH EFFCKKSLPV SLSDSHYLHN VVGDTEIRKG EGMQLDQLIE SISQSRETNI RIQPFDIDEL QESFQLNDMT
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G

Arabidopsis Description

MED19AMediator of RNA polymerase II transcription subunit 19a [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.