CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47954	Soybean	nucleus	96.4	95.96
VIT_00s0174g00320.t01	Wine grape	nucleus	56.76	81.82
PGSC0003DMT400074614	Potato	nucleus	56.31	80.13
KXG23999	Sorghum	nucleus	76.13	77.88
TraesCS5A01G038000.1	Wheat	nucleus	70.72	77.34
TraesCS7A01G546500.1	Wheat	nucleus	70.27	76.85
TraesCS7B01G469600.1	Wheat	nucleus	70.27	76.85
TraesCS7D01G532700.1	Wheat	nucleus	70.27	76.85
PGSC0003DMT400053217	Potato	nucleus	71.17	76.7
Solyc09g020010.1.1	Tomato	nucleus	67.12	76.41
Solyc06g082900.2.1	Tomato	nucleus	75.68	76.36
PGSC0003DMT400071143	Potato	nucleus	75.68	76.36
Os12t0614000-01	Rice	nucleus	75.68	76.36
TraesCS5D01G045400.1	Wheat	nucleus	69.82	76.35
TraesCS5B01G039500.1	Wheat	nucleus	68.92	75.37
CDX78474	Canola	nucleus	74.32	74.66
Solyc06g007660.1.1	Tomato	nucleus	68.92	74.27
AT5G12230.1	Thale cress	nucleus	73.87	74.21
Bra006148.1-P	Field mustard	nucleus	73.42	73.76
TraesCS5A01G090300.1	Wheat	nucleus	64.86	73.47
GSMUA_Achr9P19370_001	Banana	nucleus	72.07	73.39
KRH51345	Soybean	nucleus	70.72	73.36
AT5G19480.3	Thale cress	nucleus	67.57	72.46
CDX70456	Canola	nucleus	72.07	72.4
GSMUA_Achr1P04140_001	Banana	nucleus	67.12	71.63
CDY14004	Canola	nucleus	65.77	71.57
HORVU5Hr1G009530.1	Barley	nucleus	68.02	70.89
CDX97177	Canola	nucleus	68.92	70.51
CDX92526	Canola	nucleus	64.41	70.1
CDX69696	Canola	nucleus	69.37	70.0
Bra008906.1-P	Field mustard	nucleus	68.92	69.55
KRH60658	Soybean	nucleus	73.42	69.36
GSMUA_Achr4P31560_001	Banana	nucleus	68.92	67.4
Bra002239.1-P	Field mustard	nucleus	63.06	66.04
Zm00001d032361_P001	Maize	nucleus	59.91	63.64
KXG24984	Sorghum	nucleus	61.71	63.13
Os03t0641700-02	Rice	nucleus	61.71	62.27
TraesCS5D01G384900.1	Wheat	nucleus	60.81	57.45
TraesCS5B01G377400.1	Wheat	nucleus	60.81	56.49
TraesCS5A01G375300.1	Wheat	mitochondrion	63.06	56.0
Zm00001d031065_P001	Maize	cytosol	64.86	54.75
GSMUA_Achr7P07140_001	Banana	nucleus	63.96	49.65
KRH58717	Soybean	nucleus	36.94	40.8
KRH42611	Soybean	extracellular	36.04	34.63

Protein Annotations

EntrezGene:100818495	MapMan:15.3.3.1.6	EMBL:ACUP02009849	EnsemblPlantsGene:GLYMA_16G027500	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0008134	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016592	GO:GO:0045944	UniProt:I1MKM3	EnsemblPlants:KRH06516	ProteinID:KRH06516	ProteinID:KRH06516.1
ProteinID:KRH06517.1	PANTHER:PTHR22536	PANTHER:PTHR22536:SF2	UniParc:UPI000233AA9B	SEG:seg	:

Description

hypothetical protein

Coordinates

chr16:-:2689265..2695038

Molecular Weight (calculated)

25499.1 Da

IEP (calculated)

10.269

GRAVY (calculated)

-1.466

Length

222 amino acids

Sequence
(BLAST)

001: MDPEGKKFGG GPRELTGAVD LISHFKLLPH YEFFCKRPLP VSIADTHYLH NVVGDTEIRK GDGMQLDQLI QNTSFRDTNA RIQPFDLDVL KEAFQLRETA
101: PIDLPAAEKG IPTIAGKSKS ENKDKEKKHK KHKDKDKDKD REHKKHKHRH KDRSKDKDKD KDRDKKKDKS GHRDSSADHS KKHHEKKRKH DGDDDVNDVH
201: KHKKSKHKSS KIDELGAIKV AG

Best Arabidopsis Sequence Match ( AT5G12230.1 )
(BLAST)

001: MEPERLKFGG PRELCGAADL ISQFKLVQHH EFFCKKSLPV SLSDSHYLHN VVGDTEIRKG EGMQLDQLIE SISQSRETNI RIQPFDIDEL QESFQLNDMT
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G

Arabidopsis Description

MED19AMediator of RNA polymerase II transcription subunit 19a [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.