Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008906.1-P | Field mustard | nucleus | 98.64 | 98.64 |
| CDX97177 | Canola | nucleus | 92.27 | 93.55 |
| CDX78474 | Canola | nucleus | 87.27 | 86.88 |
| CDX70456 | Canola | nucleus | 86.82 | 86.43 |
| AT5G12230.1 | Thale cress | nucleus | 84.55 | 84.16 |
| CDY14004 | Canola | nucleus | 68.64 | 74.02 |
| CDX92526 | Canola | nucleus | 67.73 | 73.04 |
| TraesCS7B01G469600.1 | Wheat | nucleus | 64.09 | 69.46 |
| KRH06516 | Soybean | nucleus | 70.0 | 69.37 |
| KRH47954 | Soybean | nucleus | 70.0 | 69.06 |
| TraesCS7A01G546500.1 | Wheat | nucleus | 63.64 | 68.97 |
| TraesCS7D01G532700.1 | Wheat | nucleus | 63.64 | 68.97 |
| VIT_00s0174g00320.t01 | Wine grape | nucleus | 48.18 | 68.83 |
| TraesCS5B01G039500.1 | Wheat | nucleus | 62.73 | 67.98 |
| TraesCS5A01G038000.1 | Wheat | nucleus | 62.73 | 67.98 |
| TraesCS5D01G045400.1 | Wheat | nucleus | 62.27 | 67.49 |
| PGSC0003DMT400074614 | Potato | nucleus | 47.73 | 67.31 |
| TraesCS5A01G090300.1 | Wheat | nucleus | 59.55 | 66.84 |
| KXG23999 | Sorghum | nucleus | 65.91 | 66.82 |
| PGSC0003DMT400053217 | Potato | nucleus | 61.82 | 66.02 |
| Os12t0614000-01 | Rice | nucleus | 65.45 | 65.45 |
| GSMUA_Achr1P04140_001 | Banana | nucleus | 61.82 | 65.38 |
| Solyc06g007660.1.1 | Tomato | nucleus | 60.91 | 65.05 |
| PGSC0003DMT400071143 | Potato | nucleus | 65.0 | 65.0 |
| Solyc06g082900.2.1 | Tomato | nucleus | 65.0 | 65.0 |
| Solyc09g020010.1.1 | Tomato | nucleus | 57.27 | 64.62 |
| GSMUA_Achr9P19370_001 | Banana | nucleus | 62.73 | 63.3 |
| HORVU5Hr1G009530.1 | Barley | nucleus | 59.55 | 61.5 |
| GSMUA_Achr4P31560_001 | Banana | nucleus | 61.82 | 59.91 |
| KRH51345 | Soybean | nucleus | 57.73 | 59.35 |
| Zm00001d032361_P001 | Maize | nucleus | 55.45 | 58.37 |
| KXG24984 | Sorghum | nucleus | 56.36 | 57.14 |
| Os03t0641700-02 | Rice | nucleus | 55.91 | 55.91 |
| KRH60658 | Soybean | nucleus | 58.64 | 54.89 |
| TraesCS5D01G384900.1 | Wheat | nucleus | 55.91 | 52.34 |
| TraesCS5B01G377400.1 | Wheat | nucleus | 55.45 | 51.05 |
| TraesCS5A01G375300.1 | Wheat | mitochondrion | 57.73 | 50.8 |
| Zm00001d031065_P001 | Maize | cytosol | 55.91 | 46.77 |
| GSMUA_Achr7P07140_001 | Banana | nucleus | 57.73 | 44.41 |
Protein Annotations
| EnsemblPlants:CDX69696 | EnsemblPlantsGene:GSBRNA2T00135726001 | PANTHER:PTHR22536 | PANTHER:PTHR22536:SF2 | ProteinID:CDX69696 | ProteinID:CDX69696.1 |
| SEG:seg | UniParc:UPI0004EDB294 | MapMan:15.3.3.1.6 | : | : | : |
Description
BnaA10g20450D
Coordinates
chrLK031790:+:1439983..1442555
Molecular Weight (calculated)
25585.0 Da
IEP (calculated)
10.022
GRAVY (calculated)
-1.644
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPERTKFGG PKELCGAVDL LSQYKLSQHH EFFCKKSLSA SLSDSHYLHN VVGDTEIRKG EGMQLDQLVQ NMSQSRETNS TRIQPFEMDE LMEAFQLSDT
101: TPVELPLEEK GAPTIPPKSK SESKDKDRKH KKHKDRGKDK DREHKKHKHR HRDRSKDKDK DRDRKKDKNG HHDSGEHSKK HHDKKRKHDG DEDLNDIHRH
201: KKNKHKSSKL DEMGAIRVGG
101: TPVELPLEEK GAPTIPPKSK SESKDKDRKH KKHKDRGKDK DREHKKHKHR HRDRSKDKDK DRDRKKDKNG HHDSGEHSKK HHDKKRKHDG DEDLNDIHRH
201: KKNKHKSSKL DEMGAIRVGG
001: MEPERLKFGG PRELCGAADL ISQFKLVQHH EFFCKKSLPV SLSDSHYLHN VVGDTEIRKG EGMQLDQLIE SISQSRETNI RIQPFDIDEL QESFQLNDMT
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G
Arabidopsis Description
MED19AMediator of RNA polymerase II transcription subunit 19a [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.