Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006148.1-P | Field mustard | nucleus | 98.19 | 98.19 |
| CDX70456 | Canola | nucleus | 95.48 | 95.48 |
| CDX97177 | Canola | nucleus | 85.97 | 87.56 |
| CDX69696 | Canola | nucleus | 86.88 | 87.27 |
| AT5G12230.1 | Thale cress | nucleus | 85.52 | 85.52 |
| CDY14004 | Canola | nucleus | 69.68 | 75.49 |
| CDX92526 | Canola | nucleus | 68.78 | 74.51 |
| KRH47954 | Soybean | nucleus | 75.11 | 74.44 |
| KRH06516 | Soybean | nucleus | 74.66 | 74.32 |
| VIT_00s0174g00320.t01 | Wine grape | nucleus | 49.77 | 71.43 |
| PGSC0003DMT400074614 | Potato | nucleus | 49.32 | 69.87 |
| TraesCS7B01G469600.1 | Wheat | nucleus | 62.44 | 67.98 |
| TraesCS7A01G546500.1 | Wheat | nucleus | 62.44 | 67.98 |
| TraesCS7D01G532700.1 | Wheat | nucleus | 62.44 | 67.98 |
| Solyc06g082900.2.1 | Tomato | nucleus | 66.97 | 67.27 |
| TraesCS5D01G045400.1 | Wheat | nucleus | 61.54 | 67.0 |
| TraesCS5A01G038000.1 | Wheat | nucleus | 61.54 | 67.0 |
| Solyc09g020010.1.1 | Tomato | nucleus | 58.82 | 66.67 |
| PGSC0003DMT400053217 | Potato | nucleus | 61.99 | 66.5 |
| PGSC0003DMT400071143 | Potato | nucleus | 66.06 | 66.36 |
| Solyc06g007660.1.1 | Tomato | nucleus | 61.54 | 66.02 |
| TraesCS5B01G039500.1 | Wheat | nucleus | 60.63 | 66.01 |
| KXG23999 | Sorghum | nucleus | 64.71 | 65.9 |
| Os12t0614000-01 | Rice | nucleus | 65.16 | 65.45 |
| GSMUA_Achr1P04140_001 | Banana | nucleus | 61.54 | 65.38 |
| TraesCS5A01G090300.1 | Wheat | nucleus | 57.92 | 65.31 |
| GSMUA_Achr9P19370_001 | Banana | nucleus | 63.35 | 64.22 |
| KRH51345 | Soybean | nucleus | 61.99 | 64.02 |
| GSMUA_Achr4P31560_001 | Banana | nucleus | 64.25 | 62.56 |
| HORVU5Hr1G009530.1 | Barley | nucleus | 59.73 | 61.97 |
| Zm00001d032361_P001 | Maize | nucleus | 56.56 | 59.81 |
| KXG24984 | Sorghum | nucleus | 57.47 | 58.53 |
| KRH60658 | Soybean | nucleus | 61.99 | 58.3 |
| Os03t0641700-02 | Rice | nucleus | 57.01 | 57.27 |
| TraesCS5D01G384900.1 | Wheat | nucleus | 57.92 | 54.47 |
| TraesCS5A01G375300.1 | Wheat | mitochondrion | 60.18 | 53.2 |
| TraesCS5B01G377400.1 | Wheat | nucleus | 57.47 | 53.14 |
| Zm00001d031065_P001 | Maize | cytosol | 55.66 | 46.77 |
| GSMUA_Achr7P07140_001 | Banana | nucleus | 57.92 | 44.76 |
Protein Annotations
| EnsemblPlants:CDX78474 | EnsemblPlantsGene:GSBRNA2T00129867001 | PANTHER:PTHR22536 | PANTHER:PTHR22536:SF2 | ProteinID:CDX78474 | ProteinID:CDX78474.1 |
| SEG:seg | UniParc:UPI0004EE1DB2 | MapMan:15.3.3.1.6 | : | : | : |
Description
BnaA03g03860D
Coordinates
chrLK031815:-:917188..919537
Molecular Weight (calculated)
25779.2 Da
IEP (calculated)
10.128
GRAVY (calculated)
-1.593
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPERTNFGG PRELCGAVDL ISQYKLLQHH EFFCKRSLSA SLSDSHYLHD VVGDTEIRKG DGMQLDQLIQ NNTLQSRESS NTRIQPFDMD VLKEAFQLND
101: VTPVELPLAE KGAPTIPPKS KRESKDKDRK HKKHKDRDKD KDREHKKHKH RHKDRSKDKD KDRDRKKEKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVHR
201: HKKNKHRSSK LDELGAIRVA G
101: VTPVELPLAE KGAPTIPPKS KRESKDKDRK HKKHKDRDKD KDREHKKHKH RHKDRSKDKD KDRDRKKEKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVHR
201: HKKNKHRSSK LDELGAIRVA G
001: MEPERLKFGG PRELCGAADL ISQFKLVQHH EFFCKKSLPV SLSDSHYLHN VVGDTEIRKG EGMQLDQLIE SISQSRETNI RIQPFDIDEL QESFQLNDMT
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G
Arabidopsis Description
MED19AMediator of RNA polymerase II transcription subunit 19a [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.