CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92526	Canola	nucleus	97.55	97.55
AT5G19480.3	Thale cress	nucleus	85.78	84.54
CDX78474	Canola	nucleus	75.49	69.68
CDX70456	Canola	nucleus	75.0	69.23
CDX97177	Canola	nucleus	73.04	68.66
CDX69696	Canola	nucleus	74.02	68.64
KRH06516	Soybean	nucleus	71.57	65.77
TraesCS7D01G532700.1	Wheat	nucleus	65.2	65.52
TraesCS7B01G469600.1	Wheat	nucleus	65.2	65.52
TraesCS7A01G546500.1	Wheat	nucleus	65.2	65.52
TraesCS5D01G045400.1	Wheat	nucleus	65.2	65.52
TraesCS5A01G038000.1	Wheat	nucleus	64.71	65.02
KRH47954	Soybean	nucleus	71.08	65.02
TraesCS5B01G039500.1	Wheat	nucleus	63.24	63.55
GSMUA_Achr1P04140_001	Banana	nucleus	64.71	63.46
TraesCS5A01G090300.1	Wheat	nucleus	60.29	62.76
KXG23999	Sorghum	nucleus	66.67	62.67
PGSC0003DMT400053217	Potato	nucleus	63.24	62.62
VIT_00s0174g00320.t01	Wine grape	nucleus	47.06	62.34
Solyc06g007660.1.1	Tomato	nucleus	62.75	62.14
Solyc09g020010.1.1	Tomato	nucleus	57.84	60.51
Os12t0614000-01	Rice	nucleus	65.2	60.45
PGSC0003DMT400071143	Potato	nucleus	64.71	60.0
Solyc06g082900.2.1	Tomato	nucleus	64.71	60.0
GSMUA_Achr4P31560_001	Banana	nucleus	66.18	59.47
HORVU5Hr1G009530.1	Barley	nucleus	61.76	59.15
GSMUA_Achr9P19370_001	Banana	nucleus	62.75	58.72
PGSC0003DMT400074614	Potato	nucleus	43.63	57.05
KRH51345	Soybean	nucleus	59.8	57.01
Zm00001d032361_P001	Maize	nucleus	55.88	54.55
KRH60658	Soybean	nucleus	62.25	54.04
KXG24984	Sorghum	nucleus	56.86	53.46
Os03t0641700-02	Rice	nucleus	55.39	51.36
TraesCS5D01G384900.1	Wheat	nucleus	58.82	51.06
TraesCS5B01G377400.1	Wheat	nucleus	58.33	49.79
TraesCS5A01G375300.1	Wheat	mitochondrion	60.29	49.2
Zm00001d031065_P001	Maize	cytosol	58.82	45.63
GSMUA_Achr7P07140_001	Banana	nucleus	58.82	41.96

Protein Annotations

EnsemblPlants:CDY14004	EnsemblPlantsGene:GSBRNA2T00078522001	PANTHER:PTHR22536	PANTHER:PTHR22536:SF2	ProteinID:CDY14004	ProteinID:CDY14004.1
SEG:seg	UniParc:UPI0004EDD34F	UniProt:A0A078FM82	MapMan:15.3.3.1.6	:	:

Description

BnaC09g38220DBnaC09g38220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FM82]

Coordinates

chrLK032039:+:770045..772073

Molecular Weight (calculated)

23723.7 Da

IEP (calculated)

10.256

GRAVY (calculated)

-1.677

Length

204 amino acids

Sequence
(BLAST)

001: MESESAKFGG PRELGGARDL ITQYKLLPHH EFFCKRSLPE SLSDAHYLHN VVGDTDIRKG EGMQLDQLIP NASHNRDTNA RIQPFVLDEL KEAFELNDTS
101: PVELPPAEKG ALTIASKSKS DSKDRDRKHK KHKDRNKDKD REHKKHKHKH KDRSKDKDKD KDRERKKEKS GHHDKKRKHN GNEDLDDAQR HKKSKHKSSK
201: VDER

Best Arabidopsis Sequence Match ( AT5G19480.4 )
(BLAST)

001: MESESVKFGG PRELGGALDL ITQYKLLPHH EFFCKRSLPE SLSDAHYLHN LVGDTEIRKG EGMQLDQLIP NASLSSRDTN ARIQPFVLDE LKEAFELNDT
101: APVELPPAEK GAPTTVSKSK SESKDKDRKH RKHKDKKEKD REHKKHKHKH KDRIKDKDKD KDRDKKKEKS GHHDKKRKNN GTEDADDVQR HKKSKHKSSK
201: LDEMGAM

Arabidopsis Description

MED19BProbable mediator of RNA polymerase II transcription subunit 19b [Source:UniProtKB/Swiss-Prot;Acc:Q6NQD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.