Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78474 | Canola | nucleus | 95.48 | 95.48 |
| CDX69696 | Canola | nucleus | 86.43 | 86.82 |
| CDX97177 | Canola | nucleus | 84.62 | 86.18 |
| AT5G12230.1 | Thale cress | nucleus | 85.52 | 85.52 |
| CDY14004 | Canola | nucleus | 69.23 | 75.0 |
| CDX92526 | Canola | nucleus | 68.33 | 74.02 |
| KRH47954 | Soybean | nucleus | 73.3 | 72.65 |
| KRH06516 | Soybean | nucleus | 72.4 | 72.07 |
| VIT_00s0174g00320.t01 | Wine grape | nucleus | 49.32 | 70.78 |
| PGSC0003DMT400074614 | Potato | nucleus | 49.32 | 69.87 |
| TraesCS7D01G532700.1 | Wheat | nucleus | 62.9 | 68.47 |
| TraesCS7B01G469600.1 | Wheat | nucleus | 62.9 | 68.47 |
| TraesCS7A01G546500.1 | Wheat | nucleus | 62.9 | 68.47 |
| TraesCS5D01G045400.1 | Wheat | nucleus | 61.99 | 67.49 |
| TraesCS5A01G038000.1 | Wheat | nucleus | 61.99 | 67.49 |
| TraesCS5B01G039500.1 | Wheat | nucleus | 61.09 | 66.5 |
| Solyc06g082900.2.1 | Tomato | nucleus | 66.06 | 66.36 |
| PGSC0003DMT400053217 | Potato | nucleus | 61.54 | 66.02 |
| TraesCS5A01G090300.1 | Wheat | nucleus | 58.37 | 65.82 |
| Solyc09g020010.1.1 | Tomato | nucleus | 57.92 | 65.64 |
| Solyc06g007660.1.1 | Tomato | nucleus | 61.09 | 65.53 |
| PGSC0003DMT400071143 | Potato | nucleus | 65.16 | 65.45 |
| KXG23999 | Sorghum | nucleus | 64.25 | 65.44 |
| Os12t0614000-01 | Rice | nucleus | 64.71 | 65.0 |
| GSMUA_Achr1P04140_001 | Banana | nucleus | 60.63 | 64.42 |
| GSMUA_Achr9P19370_001 | Banana | nucleus | 62.44 | 63.3 |
| KRH51345 | Soybean | nucleus | 60.63 | 62.62 |
| GSMUA_Achr4P31560_001 | Banana | nucleus | 63.8 | 62.11 |
| HORVU5Hr1G009530.1 | Barley | nucleus | 59.73 | 61.97 |
| Zm00001d032361_P001 | Maize | nucleus | 56.11 | 59.33 |
| KXG24984 | Sorghum | nucleus | 57.01 | 58.06 |
| KRH60658 | Soybean | nucleus | 60.63 | 57.02 |
| Os03t0641700-02 | Rice | nucleus | 56.11 | 56.36 |
| TraesCS5D01G384900.1 | Wheat | nucleus | 56.56 | 53.19 |
| TraesCS5A01G375300.1 | Wheat | mitochondrion | 58.82 | 52.0 |
| TraesCS5B01G377400.1 | Wheat | nucleus | 56.11 | 51.88 |
| Zm00001d031065_P001 | Maize | cytosol | 55.66 | 46.77 |
| GSMUA_Achr7P07140_001 | Banana | nucleus | 57.92 | 44.76 |
Protein Annotations
| EnsemblPlants:CDX70456 | EnsemblPlantsGene:GSBRNA2T00140279001 | PANTHER:PTHR22536 | PANTHER:PTHR22536:SF2 | ProteinID:CDX70456 | ProteinID:CDX70456.1 |
| SEG:seg | UniParc:UPI0004EDE718 | MapMan:15.3.3.1.6 | : | : | : |
Description
BnaC03g05400D
Coordinates
chrLK031791:-:514019..516353
Molecular Weight (calculated)
25767.1 Da
IEP (calculated)
10.218
GRAVY (calculated)
-1.672
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPERTNFGG PRELCGAVDL ISQYKLLQYH DFFCKRSLSA SLSDSHYLHD VVGDTEIRKG DGMQLDQLIQ NNTSQSRESN NTRIQPFDMD KLKEAFQLND
101: MTPVELPPAE KGAPTIPPKS KRESKDKDRK HKKHKDRDKD KDREHKKHKH RHKDRSKDKD KDRDRKKGKN GHHDSGDHAK KHHDKKRKHD GDEDLNDVHR
201: HKKNKHRSSK LDEMGAIRVA G
101: MTPVELPPAE KGAPTIPPKS KRESKDKDRK HKKHKDRDKD KDREHKKHKH RHKDRSKDKD KDRDRKKGKN GHHDSGDHAK KHHDKKRKHD GDEDLNDVHR
201: HKKNKHRSSK LDEMGAIRVA G
001: MEPERLKFGG PRELCGAADL ISQFKLVQHH EFFCKKSLPV SLSDSHYLHN VVGDTEIRKG EGMQLDQLIE SISQSRETNI RIQPFDIDEL QESFQLNDMT
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G
Arabidopsis Description
MED19AMediator of RNA polymerase II transcription subunit 19a [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.