CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032361_P001	Maize	nucleus	93.55	97.13
Os03t0641700-02	Rice	nucleus	81.57	80.45
TraesCS5D01G384900.1	Wheat	nucleus	81.11	74.89
KXG23999	Sorghum	nucleus	74.65	74.65
TraesCS5B01G377400.1	Wheat	nucleus	81.11	73.64
TraesCS5A01G375300.1	Wheat	mitochondrion	82.49	71.6
GSMUA_Achr1P04140_001	Banana	nucleus	64.98	67.79
Solyc09g020010.1.1	Tomato	nucleus	59.91	66.67
GSMUA_Achr4P31560_001	Banana	nucleus	67.74	64.76
Solyc06g007660.1.1	Tomato	nucleus	61.29	64.56
GSMUA_Achr9P19370_001	Banana	nucleus	64.52	64.22
PGSC0003DMT400053217	Potato	nucleus	60.37	63.59
KRH06516	Soybean	nucleus	63.13	61.71
KRH47954	Soybean	nucleus	61.75	60.09
Solyc06g082900.2.1	Tomato	nucleus	60.37	59.55
PGSC0003DMT400071143	Potato	nucleus	59.91	59.09
Bra006148.1-P	Field mustard	nucleus	58.53	57.47
CDX78474	Canola	nucleus	58.53	57.47
AT5G12230.1	Thale cress	nucleus	58.06	57.01
CDX70456	Canola	nucleus	58.06	57.01
CDY14004	Canola	nucleus	53.46	56.86
CDX97177	Canola	nucleus	56.68	56.68
KRH51345	Soybean	nucleus	55.76	56.54
AT5G19480.3	Thale cress	nucleus	53.92	56.52
CDX92526	Canola	nucleus	53.0	56.37
CDX69696	Canola	nucleus	57.14	56.36
VIT_00s0174g00320.t01	Wine grape	nucleus	39.63	55.84
PGSC0003DMT400074614	Potato	nucleus	40.09	55.77
Bra008906.1-P	Field mustard	nucleus	56.22	55.45
Bra002239.1-P	Field mustard	nucleus	53.46	54.72
KRH60658	Soybean	nucleus	56.22	51.91
GSMUA_Achr7P07140_001	Banana	nucleus	64.52	48.95

Protein Annotations

EnsemblPlants:KXG24984	EnsemblPlantsGene:SORBI_3007G106800	ncoils:Coil	PANTHER:PTHR22536	PANTHER:PTHR22536:SF2	ProteinID:KXG24984
ProteinID:KXG24984.1	SEG:seg	UniParc:UPI0001C80C32	UniProt:A0A1B6PH07	MapMan:15.3.3.1.6	:

Description

hypothetical protein

Coordinates

chr7:+:38349246..38360798

Molecular Weight (calculated)

24825.2 Da

IEP (calculated)

10.446

GRAVY (calculated)

-1.553

Length

217 amino acids

Sequence
(BLAST)

001: MSSSNQMCSD GKFGRGPREL SGAVDLISRY KLLNHHSFFC KKPLPLAISD TNYLNNVVGD TEIRKGEGME LDQLFQNSYS SEKTAYIQPF DMETLGQAFQ
101: LRETAPVDLP SAEKGTPTIS GKSKVKSKDK VKKHKKHKEK DRDKEKEQKK HKHRHKDRSK DKDKDKDKDK EKKKDKSGNH DSGGDHSKKH EKKRKQEVTG
201: SSANVQNHKK TQKHKNQ

Best Arabidopsis Sequence Match ( AT5G12230.1 )
(BLAST)

001: MEPERLKFGG PRELCGAADL ISQFKLVQHH EFFCKKSLPV SLSDSHYLHN VVGDTEIRKG EGMQLDQLIE SISQSRETNI RIQPFDIDEL QESFQLNDMT
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G

Arabidopsis Description

MED19AMediator of RNA polymerase II transcription subunit 19a [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.