Factsheet for TraesCS5B01G377400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G384900.1	Wheat	nucleus	95.82	97.45
TraesCS5A01G375300.1	Wheat	mitochondrion	93.72	89.6
KXG24984	Sorghum	nucleus	73.64	81.11
Os03t0641700-02	Rice	nucleus	74.48	80.91
Zm00001d032361_P001	Maize	nucleus	70.29	80.38
TraesCS7B01G469600.1	Wheat	nucleus	61.51	72.41
TraesCS5B01G039500.1	Wheat	nucleus	60.25	70.94
Solyc09g020010.1.1	Tomato	nucleus	54.39	66.67
GSMUA_Achr1P04140_001	Banana	nucleus	57.32	65.87
Solyc06g007660.1.1	Tomato	nucleus	54.39	63.11
GSMUA_Achr4P31560_001	Banana	nucleus	59.83	63.0
PGSC0003DMT400053217	Potato	nucleus	53.56	62.14
KRH06516	Soybean	nucleus	56.49	60.81
GSMUA_Achr9P19370_001	Banana	nucleus	55.23	60.55
KRH47954	Soybean	nucleus	54.81	58.74
CDY14004	Canola	nucleus	49.79	58.33
Solyc06g082900.2.1	Tomato	nucleus	53.56	58.18
PGSC0003DMT400071143	Potato	nucleus	53.56	58.18
CDX78474	Canola	nucleus	53.14	57.47
CDX92526	Canola	nucleus	48.95	57.35
Bra006148.1-P	Field mustard	nucleus	52.72	57.01
CDX97177	Canola	nucleus	51.46	56.68
Bra002239.1-P	Field mustard	nucleus	50.21	56.6
AT5G12230.1	Thale cress	nucleus	52.3	56.56
KRH51345	Soybean	nucleus	50.63	56.54
CDX70456	Canola	nucleus	51.88	56.11
AT5G19480.3	Thale cress	nucleus	48.54	56.04
Bra008906.1-P	Field mustard	nucleus	51.46	55.91
PGSC0003DMT400074614	Potato	nucleus	36.4	55.77
CDX69696	Canola	nucleus	51.05	55.45
VIT_00s0174g00320.t01	Wine grape	nucleus	33.47	51.95
KRH60658	Soybean	nucleus	50.63	51.49
GSMUA_Achr7P07140_001	Banana	nucleus	56.49	47.2

Protein Annotations

EnsemblPlants:TraesCS5B01G377400.1	EnsemblPlantsGene:TraesCS5B01G377400	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016592	InterPro:Mediator_Med19_met	ncoils:Coil	PANTHER:PTHR22536	PANTHER:PTHR22536:SF2
PFAM:PF10278	SEG:seg	MapMan:15.3.3.1.6	:	:	:

Description

No Description!

Coordinates

chr5B:-:554821661..554823682

Molecular Weight (calculated)

27737.1 Da

IEP (calculated)

10.491

GRAVY (calculated)

-1.661

Length

239 amino acids

Sequence
(BLAST)

001: MSGSNQMASD GKFGKGPREL TGAVDLISRY RLLNHHSFFC KKPLPLAISD THYLQNVVGD TEIRKGEGME IDQLIQSPDL REKKTAYIKP FDMETLGHAF
101: QLRETAPVDL PSAEKGTPTI SGNSKVKSRD KVKKHKKHKA KDKDKEQKKH KHRHKDRSKD KDKDKEKEKE KEKEKEKEKE KEKEKEKDKD KEKKKEKSVH
201: HDLGGDNSKK HHEKKRKHEG MENLAAGRNH KKTQKRKVQ

Best Arabidopsis Sequence Match ( AT5G12230.1 )
(BLAST)

001: MEPERLKFGG PRELCGAADL ISQFKLVQHH EFFCKKSLPV SLSDSHYLHN VVGDTEIRKG EGMQLDQLIE SISQSRETNI RIQPFDIDEL QESFQLNDMT
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G

Arabidopsis Description

MED19AMediator of RNA polymerase II transcription subunit 19a [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.