Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69696 | Canola | nucleus | 98.64 | 98.64 |
| Bra006148.1-P | Field mustard | nucleus | 87.73 | 87.33 |
| AT5G12230.1 | Thale cress | nucleus | 83.64 | 83.26 |
| Bra002239.1-P | Field mustard | nucleus | 66.82 | 69.34 |
| TraesCS7B01G469600.1 | Wheat | nucleus | 63.64 | 68.97 |
| KRH06516 | Soybean | nucleus | 69.55 | 68.92 |
| KRH47954 | Soybean | nucleus | 69.55 | 68.61 |
| TraesCS7D01G532700.1 | Wheat | nucleus | 63.18 | 68.47 |
| TraesCS7A01G546500.1 | Wheat | nucleus | 63.18 | 68.47 |
| VIT_00s0174g00320.t01 | Wine grape | nucleus | 47.27 | 67.53 |
| TraesCS5B01G039500.1 | Wheat | nucleus | 62.27 | 67.49 |
| TraesCS5A01G038000.1 | Wheat | nucleus | 62.27 | 67.49 |
| TraesCS5D01G045400.1 | Wheat | nucleus | 61.82 | 67.0 |
| KXG23999 | Sorghum | nucleus | 65.45 | 66.36 |
| TraesCS5A01G090300.1 | Wheat | nucleus | 59.09 | 66.33 |
| PGSC0003DMT400074614 | Potato | nucleus | 46.82 | 66.03 |
| PGSC0003DMT400053217 | Potato | nucleus | 61.36 | 65.53 |
| Os12t0614000-01 | Rice | nucleus | 65.0 | 65.0 |
| GSMUA_Achr1P04140_001 | Banana | nucleus | 61.36 | 64.9 |
| Solyc06g007660.1.1 | Tomato | nucleus | 60.45 | 64.56 |
| PGSC0003DMT400071143 | Potato | nucleus | 64.09 | 64.09 |
| Solyc06g082900.2.1 | Tomato | nucleus | 64.09 | 64.09 |
| Solyc09g020010.1.1 | Tomato | nucleus | 56.36 | 63.59 |
| GSMUA_Achr9P19370_001 | Banana | nucleus | 62.27 | 62.84 |
| HORVU5Hr1G009530.1 | Barley | nucleus | 59.09 | 61.03 |
| GSMUA_Achr4P31560_001 | Banana | nucleus | 61.36 | 59.47 |
| KRH51345 | Soybean | nucleus | 56.82 | 58.41 |
| Zm00001d032361_P001 | Maize | nucleus | 54.55 | 57.42 |
| KXG24984 | Sorghum | nucleus | 55.45 | 56.22 |
| Os03t0641700-02 | Rice | nucleus | 55.45 | 55.45 |
| KRH60658 | Soybean | nucleus | 57.73 | 54.04 |
| TraesCS5D01G384900.1 | Wheat | nucleus | 56.36 | 52.77 |
| TraesCS5B01G377400.1 | Wheat | nucleus | 55.91 | 51.46 |
| TraesCS5A01G375300.1 | Wheat | mitochondrion | 58.18 | 51.2 |
| Zm00001d031065_P001 | Maize | cytosol | 55.45 | 46.39 |
| GSMUA_Achr7P07140_001 | Banana | nucleus | 57.27 | 44.06 |
Protein Annotations
Description
AT5G12230 (E=3e-050) | unknown protein
Coordinates
chrA10:+:14365514..14366508
Molecular Weight (calculated)
25643.1 Da
IEP (calculated)
10.022
GRAVY (calculated)
-1.645
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPERTKFGG PKELCGAVDL LSQYKLSQHH EFFCKKSLSA SLSDSHYLHN VVGDTEIRKG EGMQLDQLVQ NMSQTRETNS TRIQPFEMDE LMEAFQLSDT
101: TPVELPLEEK GAPTIPPKSK SESKDKDRKH KKHKDRSKDK DREHKKHKHR HRDRSKDKDK DRDRKKEKNG HHDSGEHSKK HHDKKRKHDG DEDLNDIHRH
201: KKNKHKSSKL DEMGAIRVGG
101: TPVELPLEEK GAPTIPPKSK SESKDKDRKH KKHKDRSKDK DREHKKHKHR HRDRSKDKDK DRDRKKEKNG HHDSGEHSKK HHDKKRKHDG DEDLNDIHRH
201: KKNKHKSSKL DEMGAIRVGG
001: MEPERLKFGG PRELCGAADL ISQFKLVQHH EFFCKKSLPV SLSDSHYLHN VVGDTEIRKG EGMQLDQLIE SISQSRETNI RIQPFDIDEL QESFQLNDMT
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G
Arabidopsis Description
MED19AMediator of RNA polymerase II transcription subunit 19a [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.