Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG23999 | Sorghum | nucleus | 66.92 | 81.11 |
| TraesCS5A01G038000.1 | Wheat | nucleus | 61.6 | 79.8 |
| TraesCS7D01G532700.1 | Wheat | nucleus | 61.22 | 79.31 |
| TraesCS7A01G546500.1 | Wheat | nucleus | 61.22 | 79.31 |
| TraesCS5D01G045400.1 | Wheat | nucleus | 61.22 | 79.31 |
| TraesCS5A01G090300.1 | Wheat | nucleus | 58.94 | 79.08 |
| TraesCS7B01G469600.1 | Wheat | nucleus | 60.84 | 78.82 |
| Os12t0614000-01 | Rice | nucleus | 65.4 | 78.18 |
| HORVU5Hr1G009530.1 | Barley | nucleus | 63.12 | 77.93 |
| TraesCS5B01G039500.1 | Wheat | nucleus | 60.08 | 77.83 |
| Zm00001d032361_P001 | Maize | nucleus | 52.85 | 66.51 |
| KRH06516 | Soybean | nucleus | 54.75 | 64.86 |
| GSMUA_Achr1P04140_001 | Banana | nucleus | 50.95 | 64.42 |
| Solyc09g020010.1.1 | Tomato | nucleus | 47.53 | 64.1 |
| Solyc06g007660.1.1 | Tomato | nucleus | 50.19 | 64.08 |
| PGSC0003DMT400053217 | Potato | nucleus | 49.43 | 63.11 |
| GSMUA_Achr4P31560_001 | Banana | nucleus | 54.37 | 63.0 |
| GSMUA_Achr9P19370_001 | Banana | nucleus | 52.09 | 62.84 |
| KRH47954 | Soybean | nucleus | 52.09 | 61.44 |
| AT5G19480.3 | Thale cress | nucleus | 47.53 | 60.39 |
| PGSC0003DMT400071143 | Potato | nucleus | 50.19 | 60.0 |
| Solyc06g082900.2.1 | Tomato | nucleus | 50.19 | 60.0 |
| PGSC0003DMT400074614 | Potato | nucleus | 35.36 | 59.62 |
| CDY14004 | Canola | nucleus | 45.63 | 58.82 |
| CDX92526 | Canola | nucleus | 45.25 | 58.33 |
| Bra002239.1-P | Field mustard | nucleus | 46.39 | 57.55 |
| CDX97177 | Canola | nucleus | 47.15 | 57.14 |
| VIT_00s0174g00320.t01 | Wine grape | nucleus | 33.08 | 56.49 |
| CDX69696 | Canola | nucleus | 46.77 | 55.91 |
| AT5G12230.1 | Thale cress | nucleus | 46.77 | 55.66 |
| Bra006148.1-P | Field mustard | nucleus | 46.77 | 55.66 |
| CDX70456 | Canola | nucleus | 46.77 | 55.66 |
| CDX78474 | Canola | nucleus | 46.77 | 55.66 |
| Bra008906.1-P | Field mustard | nucleus | 46.39 | 55.45 |
| KRH51345 | Soybean | nucleus | 44.11 | 54.21 |
| KRH60658 | Soybean | nucleus | 45.25 | 50.64 |
| GSMUA_Achr7P07140_001 | Banana | nucleus | 53.23 | 48.95 |
Protein Annotations
| EnsemblPlants:Zm00001d031065_P001 | EnsemblPlants:Zm00001d031065_T001 | EnsemblPlantsGene:Zm00001d031065 | PANTHER:PTHR22536 | PANTHER:PTHR22536:SF2 | ProteinID:ONM02108.1 |
| SEG:seg | UniParc:UPI000842B48B | UniProt:A0A1D6KG99 | MapMan:15.3.3.1.6 | : | : |
Description
Probable mediator of RNA polymerase II transcription subunit 19b
Coordinates
chr1:+:175602323..175609344
Molecular Weight (calculated)
30808.8 Da
IEP (calculated)
9.540
GRAVY (calculated)
-1.087
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMSTEGNPY FVLDDTEERE MWAQHRAMTR CHQVMLRRVN EQLVRPRELT GAVDLISHYK LLPHHDFFCK KPLPLAISDT HYLHNVVGDT EIRKGEGMEL
101: DQLVHNAYLR DKPAYIQPFD METLGQAFQL RETALVDLPS TEKGIPTISG KPKSESKDKE KKHKRHKDKD KEHKKHKHRH KDRSKDKDKD KDKDKKKDKS
201: GHHEKKRKHE GTEDSVDVHK HKKSKVAHCY YFLADTIAFI EKICLFVFNM DGQLTAAQEL QNR
101: DQLVHNAYLR DKPAYIQPFD METLGQAFQL RETALVDLPS TEKGIPTISG KPKSESKDKE KKHKRHKDKD KEHKKHKHRH KDRSKDKDKD KDKDKKKDKS
201: GHHEKKRKHE GTEDSVDVHK HKKSKVAHCY YFLADTIAFI EKICLFVFNM DGQLTAAQEL QNR
001: MESESVKFGG PRELGGALDL ITQYKLLPHH EFFCKRSLPE SLSDAHYLHN LVGDTEIRKG EGMQLDQLIP NASLSSRDTN ARIQPFVLDE LKEAFELNDT
101: APVELPPAEK GAPTTVSKSK SESKDKDRKH RKHKDKKEKD REHKKHKHKH KDRIKDKDKD KDRDKKKEKS GHHDKKRKNN GTEDADDVQR HKKSKHKSSK
201: LDEMGAM
101: APVELPPAEK GAPTTVSKSK SESKDKDRKH RKHKDKKEKD REHKKHKHKH KDRIKDKDKD KDRDKKKEKS GHHDKKRKNN GTEDADDVQR HKKSKHKSSK
201: LDEMGAM
Arabidopsis Description
MED19BProbable mediator of RNA polymerase II transcription subunit 19b [Source:UniProtKB/Swiss-Prot;Acc:Q6NQD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.