Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14004 | Canola | nucleus | 97.55 | 97.55 |
| Bra002239.1-P | Field mustard | nucleus | 95.59 | 91.98 |
| AT5G19480.3 | Thale cress | nucleus | 85.29 | 84.06 |
| CDX78474 | Canola | nucleus | 74.51 | 68.78 |
| CDX70456 | Canola | nucleus | 74.02 | 68.33 |
| CDX97177 | Canola | nucleus | 72.06 | 67.74 |
| CDX69696 | Canola | nucleus | 73.04 | 67.73 |
| TraesCS7A01G546500.1 | Wheat | nucleus | 64.22 | 64.53 |
| TraesCS5D01G045400.1 | Wheat | nucleus | 64.22 | 64.53 |
| TraesCS7B01G469600.1 | Wheat | nucleus | 64.22 | 64.53 |
| TraesCS7D01G532700.1 | Wheat | nucleus | 64.22 | 64.53 |
| KRH06516 | Soybean | nucleus | 70.1 | 64.41 |
| TraesCS5A01G038000.1 | Wheat | nucleus | 63.73 | 64.04 |
| KRH47954 | Soybean | nucleus | 69.61 | 63.68 |
| TraesCS5B01G039500.1 | Wheat | nucleus | 62.25 | 62.56 |
| KXG23999 | Sorghum | nucleus | 65.69 | 61.75 |
| TraesCS5A01G090300.1 | Wheat | nucleus | 59.31 | 61.73 |
| PGSC0003DMT400053217 | Potato | nucleus | 62.25 | 61.65 |
| GSMUA_Achr1P04140_001 | Banana | nucleus | 62.75 | 61.54 |
| Solyc06g007660.1.1 | Tomato | nucleus | 61.76 | 61.16 |
| VIT_00s0174g00320.t01 | Wine grape | nucleus | 45.59 | 60.39 |
| Os12t0614000-01 | Rice | nucleus | 64.22 | 59.55 |
| Solyc09g020010.1.1 | Tomato | nucleus | 56.86 | 59.49 |
| HORVU5Hr1G009530.1 | Barley | nucleus | 61.27 | 58.69 |
| PGSC0003DMT400071143 | Potato | nucleus | 63.24 | 58.64 |
| Solyc06g082900.2.1 | Tomato | nucleus | 63.24 | 58.64 |
| GSMUA_Achr4P31560_001 | Banana | nucleus | 64.71 | 58.15 |
| GSMUA_Achr9P19370_001 | Banana | nucleus | 61.27 | 57.34 |
| KRH51345 | Soybean | nucleus | 59.31 | 56.54 |
| PGSC0003DMT400074614 | Potato | nucleus | 42.16 | 55.13 |
| Zm00001d032361_P001 | Maize | nucleus | 55.39 | 54.07 |
| KRH60658 | Soybean | nucleus | 61.27 | 53.19 |
| KXG24984 | Sorghum | nucleus | 56.37 | 53.0 |
| Os03t0641700-02 | Rice | nucleus | 54.9 | 50.91 |
| TraesCS5D01G384900.1 | Wheat | nucleus | 57.84 | 50.21 |
| TraesCS5B01G377400.1 | Wheat | nucleus | 57.35 | 48.95 |
| TraesCS5A01G375300.1 | Wheat | mitochondrion | 59.31 | 48.4 |
| Zm00001d031065_P001 | Maize | cytosol | 58.33 | 45.25 |
| GSMUA_Achr7P07140_001 | Banana | nucleus | 56.86 | 40.56 |
Protein Annotations
| EnsemblPlants:CDX92526 | EnsemblPlantsGene:GSBRNA2T00154307001 | PANTHER:PTHR22536 | PANTHER:PTHR22536:SF2 | ProteinID:CDX92526 | ProteinID:CDX92526.1 |
| SEG:seg | UniParc:UPI0004EE4311 | MapMan:15.3.3.1.6 | : | : | : |
Description
BnaA10g15650D
Coordinates
chrLK031872:-:1071193..1073348
Molecular Weight (calculated)
23715.7 Da
IEP (calculated)
10.319
GRAVY (calculated)
-1.671
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MESESAKFGG PRELGGARDL ITQYKLLPHH EFFCKRSLPE SLSDAHYLHN VVGDTDIRKG EGMQLDQLIP NASHNRDGNA RIQPFVLDEL KEAFEINDTS
101: PVELPPAEKG ALTIASKSKS ESKDRDRKHK KHKDRNKDKH REHKKHKHKH KDRSKDKDKD KDRERKKEKS GHHDKKRKHN GNEDLDDAQR HKKSKHKSSK
201: VDER
101: PVELPPAEKG ALTIASKSKS ESKDRDRKHK KHKDRNKDKH REHKKHKHKH KDRSKDKDKD KDRERKKEKS GHHDKKRKHN GNEDLDDAQR HKKSKHKSSK
201: VDER
001: MESESVKFGG PRELGGALDL ITQYKLLPHH EFFCKRSLPE SLSDAHYLHN LVGDTEIRKG EGMQLDQLIP NASLSSRDTN ARIQPFVLDE LKEAFELNDT
101: APVELPPAEK GAPTTVSKSK SESKDKDRKH RKHKDKKEKD REHKKHKHKH KDRIKDKDKD KDRDKKKEKS GHHDKKRKNN GTEDADDVQR HKKSKHKSSK
201: LDEMGAM
101: APVELPPAEK GAPTTVSKSK SESKDKDRKH RKHKDKKEKD REHKKHKHKH KDRIKDKDKD KDRDKKKEKS GHHDKKRKNN GTEDADDVQR HKKSKHKSSK
201: LDEMGAM
Arabidopsis Description
MED19BProbable mediator of RNA polymerase II transcription subunit 19b [Source:UniProtKB/Swiss-Prot;Acc:Q6NQD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.