Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14004 | Canola | nucleus | 84.54 | 85.78 |
| CDX92526 | Canola | nucleus | 84.06 | 85.29 |
| Bra002239.1-P | Field mustard | nucleus | 82.13 | 80.19 |
| AT5G12230.1 | Thale cress | nucleus | 77.29 | 72.4 |
| KRH06516 | Soybean | nucleus | 72.46 | 67.57 |
| TraesCS5A01G038000.1 | Wheat | nucleus | 65.7 | 67.0 |
| TraesCS7A01G546500.1 | Wheat | nucleus | 65.22 | 66.5 |
| TraesCS5D01G045400.1 | Wheat | nucleus | 65.22 | 66.5 |
| TraesCS7B01G469600.1 | Wheat | nucleus | 65.22 | 66.5 |
| TraesCS7D01G532700.1 | Wheat | nucleus | 65.22 | 66.5 |
| KRH47954 | Soybean | nucleus | 71.5 | 66.37 |
| TraesCS5B01G039500.1 | Wheat | nucleus | 64.25 | 65.52 |
| KXG23999 | Sorghum | nucleus | 67.63 | 64.52 |
| TraesCS5A01G090300.1 | Wheat | nucleus | 60.39 | 63.78 |
| PGSC0003DMT400053217 | Potato | nucleus | 63.28 | 63.59 |
| Solyc09g020010.1.1 | Tomato | nucleus | 59.42 | 63.08 |
| Solyc06g007660.1.1 | Tomato | nucleus | 62.32 | 62.62 |
| GSMUA_Achr1P04140_001 | Banana | nucleus | 62.8 | 62.5 |
| Os12t0614000-01 | Rice | nucleus | 65.7 | 61.82 |
| VIT_00s0174g00320.t01 | Wine grape | nucleus | 45.89 | 61.69 |
| HORVU5Hr1G009530.1 | Barley | nucleus | 62.8 | 61.03 |
| Solyc06g082900.2.1 | Tomato | nucleus | 64.25 | 60.45 |
| PGSC0003DMT400074614 | Potato | nucleus | 45.41 | 60.26 |
| GSMUA_Achr9P19370_001 | Banana | nucleus | 62.8 | 59.63 |
| PGSC0003DMT400071143 | Potato | nucleus | 63.28 | 59.55 |
| GSMUA_Achr4P31560_001 | Banana | nucleus | 63.28 | 57.71 |
| KRH51345 | Soybean | nucleus | 57.49 | 55.61 |
| Zm00001d032361_P001 | Maize | nucleus | 55.56 | 55.02 |
| KXG24984 | Sorghum | nucleus | 56.52 | 53.92 |
| KRH60658 | Soybean | nucleus | 57.97 | 51.06 |
| Os03t0641700-02 | Rice | nucleus | 54.11 | 50.91 |
| TraesCS5D01G384900.1 | Wheat | nucleus | 56.04 | 49.36 |
| TraesCS5B01G377400.1 | Wheat | nucleus | 56.04 | 48.54 |
| TraesCS5A01G375300.1 | Wheat | mitochondrion | 57.97 | 48.0 |
| Zm00001d031065_P001 | Maize | cytosol | 60.39 | 47.53 |
| GSMUA_Achr7P07140_001 | Banana | nucleus | 58.94 | 42.66 |
Protein Annotations
| MapMan:15.3.3.1.6 | EntrezGene:832068 | ProteinID:AED92714.1 | ProteinID:AED92715.1 | EMBL:AF296837 | EMBL:AK175303 |
| EMBL:AK176603 | ProteinID:ANM69483.1 | ProteinID:ANM69484.1 | ArrayExpress:AT5G19480 | EnsemblPlantsGene:AT5G19480 | RefSeq:AT5G19480 |
| TAIR:AT5G19480 | RefSeq:AT5G19480-TAIR-G | EnsemblPlants:AT5G19480.3 | Unigene:At.31290 | EMBL:BT010517 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008134 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016592 | GO:GO:0045944 | RefSeq:NP_001031907.1 |
| RefSeq:NP_001331154.1 | RefSeq:NP_001331155.1 | RefSeq:NP_197449.1 | PANTHER:PTHR22536 | PANTHER:PTHR22536:SF2 | UniProt:Q6NQD9 |
| UniParc:UPI000016250A | SEG:seg | : | : | : | : |
Description
MED19BProbable mediator of RNA polymerase II transcription subunit 19b [Source:UniProtKB/Swiss-Prot;Acc:Q6NQD9]
Coordinates
chr5:+:6571501..6573623
Molecular Weight (calculated)
23825.1 Da
IEP (calculated)
10.089
GRAVY (calculated)
-1.480
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MESESVKFGG PRELGGALDL ITQYKLLPHH EFFCKRSLPE SLSDAHYLHN LVGDTEIRKG EGMQLDQLIP NASLSSRDTN ARIQPFVLDE LKEAFELNDT
101: APVELPPAEK GAPTTVSKSK SESKDKDRKH RKHKDKKEKD REHKKHKHKH KDRIKDKDKD KDRDKKKEKS GHHDKKRKNN GTEDADDVQR HKKSKHKSSK
201: LDEMGAM
101: APVELPPAEK GAPTTVSKSK SESKDKDRKH RKHKDKKEKD REHKKHKHKH KDRIKDKDKD KDRDKKKEKS GHHDKKRKNN GTEDADDVQR HKKSKHKSSK
201: LDEMGAM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.