CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06516	Soybean	nucleus	95.96	96.4
VIT_00s0174g00320.t01	Wine grape	nucleus	56.95	82.47
PGSC0003DMT400074614	Potato	nucleus	55.61	79.49
Solyc09g020010.1.1	Tomato	nucleus	67.26	76.92
Solyc06g082900.2.1	Tomato	nucleus	75.34	76.36
PGSC0003DMT400071143	Potato	nucleus	75.34	76.36
PGSC0003DMT400053217	Potato	nucleus	70.4	76.21
TraesCS5A01G038000.1	Wheat	nucleus	68.61	75.37
CDX78474	Canola	nucleus	74.44	75.11
TraesCS7D01G532700.1	Wheat	nucleus	68.16	74.88
TraesCS7A01G546500.1	Wheat	nucleus	68.16	74.88
TraesCS7B01G469600.1	Wheat	nucleus	68.16	74.88
KRH51345	Soybean	nucleus	71.75	74.77
KXG23999	Sorghum	nucleus	72.65	74.65
TraesCS5D01G045400.1	Wheat	nucleus	67.71	74.38
Bra006148.1-P	Field mustard	nucleus	73.54	74.21
GSMUA_Achr9P19370_001	Banana	nucleus	72.2	73.85
Solyc06g007660.1.1	Tomato	nucleus	68.16	73.79
TraesCS5B01G039500.1	Wheat	nucleus	66.82	73.4
AT5G12230.1	Thale cress	nucleus	72.65	73.3
CDX70456	Canola	nucleus	72.65	73.3
Os12t0614000-01	Rice	nucleus	72.2	73.18
TraesCS5A01G090300.1	Wheat	nucleus	63.23	71.94
GSMUA_Achr1P04140_001	Banana	nucleus	66.82	71.63
AT5G19480.3	Thale cress	nucleus	66.37	71.5
CDY14004	Canola	nucleus	65.02	71.08
CDX69696	Canola	nucleus	69.06	70.0
KRH60658	Soybean	nucleus	73.54	69.79
CDX92526	Canola	nucleus	63.68	69.61
CDX97177	Canola	nucleus	67.71	69.59
Bra008906.1-P	Field mustard	nucleus	68.61	69.55
HORVU5Hr1G009530.1	Barley	nucleus	65.92	69.01
GSMUA_Achr4P31560_001	Banana	nucleus	69.06	67.84
Bra002239.1-P	Field mustard	nucleus	62.33	65.57
Zm00001d032361_P001	Maize	nucleus	58.3	62.2
KXG24984	Sorghum	nucleus	60.09	61.75
Os03t0641700-02	Rice	nucleus	60.09	60.91
TraesCS5D01G384900.1	Wheat	nucleus	59.19	56.17
TraesCS5B01G377400.1	Wheat	nucleus	58.74	54.81
TraesCS5A01G375300.1	Wheat	mitochondrion	61.44	54.8
Zm00001d031065_P001	Maize	cytosol	61.44	52.09
GSMUA_Achr7P07140_001	Banana	nucleus	64.57	50.35
KRH58717	Soybean	nucleus	35.87	39.8
KRH42611	Soybean	extracellular	34.53	33.33

Protein Annotations

EntrezGene:100814559	MapMan:15.3.3.1.6	EMBL:ACUP02004185	EnsemblPlantsGene:GLYMA_07G058600	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0008134	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016592	GO:GO:0045944	UniProt:I1KHY2	EnsemblPlants:KRH47954	ProteinID:KRH47954	ProteinID:KRH47954.1
PANTHER:PTHR22536	PANTHER:PTHR22536:SF2	UniParc:UPI0002337ECC	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:5240996..5247125

Molecular Weight (calculated)

25574.1 Da

IEP (calculated)

10.269

GRAVY (calculated)

-1.457

Length

223 amino acids

Sequence
(BLAST)

001: MDPEGKKFGG GPRELTGAVD LISHFKLLPH YEFFCKRSLP VSIADTHYLH NVVGDTEIRK GDGMQLEQLI QNTSSFRDTN ARIQPFDLDV LKEAFQLRET
101: APIDLPAAEK GIPTIAGKSK GENKDKEKKH KKHKDKDKDK DKDREHKKHK HRHKDRTKDK DKDRDKKKDK SGHRDSSADH SKKHHEKKRK HDGDDDVNDV
201: HKHKKSKHKS SKIDELGAIK VAG

Best Arabidopsis Sequence Match ( AT5G12230.1 )
(BLAST)

001: MEPERLKFGG PRELCGAADL ISQFKLVQHH EFFCKKSLPV SLSDSHYLHN VVGDTEIRKG EGMQLDQLIE SISQSRETNI RIQPFDIDEL QESFQLNDMT
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G

Arabidopsis Description

MED19AMediator of RNA polymerase II transcription subunit 19a [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.