Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG23999 | Sorghum | nucleus | 94.09 | 95.39 |
| TraesCS5A01G038000.1 | Wheat | nucleus | 85.0 | 92.12 |
| TraesCS7D01G532700.1 | Wheat | nucleus | 84.55 | 91.63 |
| TraesCS7B01G469600.1 | Wheat | nucleus | 84.55 | 91.63 |
| TraesCS7A01G546500.1 | Wheat | nucleus | 84.55 | 91.63 |
| TraesCS5D01G045400.1 | Wheat | nucleus | 84.55 | 91.63 |
| TraesCS5B01G039500.1 | Wheat | nucleus | 83.18 | 90.15 |
| HORVU5Hr1G009530.1 | Barley | nucleus | 82.73 | 85.45 |
| TraesCS5A01G090300.1 | Wheat | nucleus | 75.91 | 85.2 |
| KRH06516 | Soybean | nucleus | 76.36 | 75.68 |
| GSMUA_Achr1P04140_001 | Banana | nucleus | 71.36 | 75.48 |
| Os03t0641700-02 | Rice | nucleus | 74.55 | 74.55 |
| Solyc09g020010.1.1 | Tomato | nucleus | 65.0 | 73.33 |
| PGSC0003DMT400053217 | Potato | nucleus | 68.64 | 73.3 |
| Solyc06g007660.1.1 | Tomato | nucleus | 68.64 | 73.3 |
| KRH47954 | Soybean | nucleus | 73.18 | 72.2 |
| GSMUA_Achr9P19370_001 | Banana | nucleus | 71.36 | 72.02 |
| GSMUA_Achr4P31560_001 | Banana | nucleus | 74.09 | 71.81 |
| PGSC0003DMT400074614 | Potato | nucleus | 49.55 | 69.87 |
| Solyc06g082900.2.1 | Tomato | nucleus | 67.73 | 67.73 |
| VIT_00s0174g00320.t01 | Wine grape | nucleus | 47.27 | 67.53 |
| PGSC0003DMT400071143 | Potato | nucleus | 67.27 | 67.27 |
| CDX97177 | Canola | nucleus | 65.91 | 66.82 |
| AT5G19480.3 | Thale cress | nucleus | 61.82 | 65.7 |
| AT5G12230.1 | Thale cress | nucleus | 65.91 | 65.61 |
| CDX69696 | Canola | nucleus | 65.45 | 65.45 |
| Zm00001d031065_P001 | Maize | cytosol | 78.18 | 65.4 |
| CDY14004 | Canola | nucleus | 60.45 | 65.2 |
| CDX78474 | Canola | nucleus | 65.45 | 65.16 |
| Bra006148.1-P | Field mustard | nucleus | 65.45 | 65.16 |
| Bra008906.1-P | Field mustard | nucleus | 65.0 | 65.0 |
| CDX70456 | Canola | nucleus | 65.0 | 64.71 |
| CDX92526 | Canola | nucleus | 59.55 | 64.22 |
| KRH51345 | Soybean | nucleus | 62.27 | 64.02 |
| Bra002239.1-P | Field mustard | nucleus | 59.55 | 61.79 |
| KRH60658 | Soybean | nucleus | 64.09 | 60.0 |
| GSMUA_Achr7P07140_001 | Banana | nucleus | 72.73 | 55.94 |
Protein Annotations
| MapMan:15.3.3.1.6 | EntrezGene:4352784 | ProteinID:ABG22085.1 | EMBL:AK068768 | UniProt:B7EFD0 | ProteinID:BAT18071.1 |
| ProteinID:EEE53605.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0008134 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016592 | GO:GO:0045944 | EnsemblPlantsGene:Os12g0614000 |
| EnsemblPlants:Os12t0614000-01 | PANTHER:PTHR22536 | PANTHER:PTHR22536:SF2 | UniParc:UPI0000D89E89 | RefSeq:XP_015618161.1 | RefSeq:XP_015618162.1 |
| RefSeq:XP_015618163.1 | SEG:seg | : | : | : | : |
Description
Mediator complex protein OsMED19aConserved hypothetical protein. (Os12t0614000-01)
Coordinates
chr12:+:26021767..26026110
Molecular Weight (calculated)
25246.6 Da
IEP (calculated)
10.018
GRAVY (calculated)
-1.565
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDDKKFGK GPRELTGAVD LISHYKLLAH HDFFCKKPLP LAISDTHYLD NVVGDTEIRK GEGMELDQLV QNAYLRDKPA YIQPFDMETL GQAFQLRETA
101: PVDLPSAEKG IPTISGKLKS ESKDKEKKHK KHKDKDRDKD KEHKKHKHRH KDRSKDKDKD KDKDKKKDKS GHHDSGGDHS KKHHEKKRKH EGMEDSADVH
201: KHKKSKHKSS RTDDTGNGLS
101: PVDLPSAEKG IPTISGKLKS ESKDKEKKHK KHKDKDRDKD KEHKKHKHRH KDRSKDKDKD KDKDKKKDKS GHHDSGGDHS KKHHEKKRKH EGMEDSADVH
201: KHKKSKHKSS RTDDTGNGLS
001: MESESVKFGG PRELGGALDL ITQYKLLPHH EFFCKRSLPE SLSDAHYLHN LVGDTEIRKG EGMQLDQLIP NASLSSRDTN ARIQPFVLDE LKEAFELNDT
101: APVELPPAEK GAPTTVSKSK SESKDKDRKH RKHKDKKEKD REHKKHKHKH KDRIKDKDKD KDRDKKKEKS GHHDKKRKNN GTEDADDVQR HKKSKHKSSK
201: LDEMGAM
101: APVELPPAEK GAPTTVSKSK SESKDKDRKH RKHKDKKEKD REHKKHKHKH KDRIKDKDKD KDRDKKKEKS GHHDKKRKNN GTEDADDVQR HKKSKHKSSK
201: LDEMGAM
Arabidopsis Description
MED19BProbable mediator of RNA polymerase II transcription subunit 19b [Source:UniProtKB/Swiss-Prot;Acc:Q6NQD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.