Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g082900.2.1 | Tomato | nucleus | 99.09 | 99.09 |
| PGSC0003DMT400074614 | Potato | nucleus | 56.82 | 80.13 |
| KRH06516 | Soybean | nucleus | 76.36 | 75.68 |
| KRH47954 | Soybean | nucleus | 76.36 | 75.34 |
| VIT_00s0174g00320.t01 | Wine grape | nucleus | 52.73 | 75.32 |
| PGSC0003DMT400053217 | Potato | nucleus | 70.45 | 75.24 |
| GSMUA_Achr1P04140_001 | Banana | nucleus | 65.45 | 69.23 |
| KXG23999 | Sorghum | nucleus | 68.18 | 69.12 |
| TraesCS7A01G546500.1 | Wheat | nucleus | 63.18 | 68.47 |
| TraesCS5A01G038000.1 | Wheat | nucleus | 63.18 | 68.47 |
| TraesCS7B01G469600.1 | Wheat | nucleus | 63.18 | 68.47 |
| TraesCS7D01G532700.1 | Wheat | nucleus | 63.18 | 68.47 |
| GSMUA_Achr9P19370_001 | Banana | nucleus | 67.73 | 68.35 |
| TraesCS5D01G045400.1 | Wheat | nucleus | 62.73 | 67.98 |
| TraesCS5B01G039500.1 | Wheat | nucleus | 62.27 | 67.49 |
| Os12t0614000-01 | Rice | nucleus | 67.27 | 67.27 |
| CDX78474 | Canola | nucleus | 66.36 | 66.06 |
| Bra006148.1-P | Field mustard | nucleus | 66.36 | 66.06 |
| TraesCS5A01G090300.1 | Wheat | nucleus | 58.64 | 65.82 |
| AT5G12230.1 | Thale cress | nucleus | 65.91 | 65.61 |
| KRH51345 | Soybean | nucleus | 63.64 | 65.42 |
| CDX70456 | Canola | nucleus | 65.45 | 65.16 |
| CDX69696 | Canola | nucleus | 65.0 | 65.0 |
| CDY14004 | Canola | nucleus | 60.0 | 64.71 |
| Bra008906.1-P | Field mustard | nucleus | 64.09 | 64.09 |
| CDX97177 | Canola | nucleus | 63.18 | 64.06 |
| AT5G19480.3 | Thale cress | nucleus | 59.55 | 63.28 |
| CDX92526 | Canola | nucleus | 58.64 | 63.24 |
| HORVU5Hr1G009530.1 | Barley | nucleus | 60.91 | 62.91 |
| GSMUA_Achr4P31560_001 | Banana | nucleus | 64.55 | 62.56 |
| KRH60658 | Soybean | nucleus | 64.55 | 60.43 |
| Zm00001d032361_P001 | Maize | nucleus | 57.27 | 60.29 |
| KXG24984 | Sorghum | nucleus | 59.09 | 59.91 |
| Bra002239.1-P | Field mustard | nucleus | 57.73 | 59.91 |
| Os03t0641700-02 | Rice | nucleus | 59.55 | 59.55 |
| TraesCS5D01G384900.1 | Wheat | nucleus | 58.18 | 54.47 |
| TraesCS5B01G377400.1 | Wheat | nucleus | 58.18 | 53.56 |
| TraesCS5A01G375300.1 | Wheat | mitochondrion | 59.55 | 52.4 |
| Zm00001d031065_P001 | Maize | cytosol | 60.0 | 50.19 |
| GSMUA_Achr7P07140_001 | Banana | nucleus | 62.27 | 47.9 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400071143 | EnsemblPlantsGene:PGSC0003DMG400027668 | EntrezGene:102590761 | PANTHER:PTHR22536 | PANTHER:PTHR22536:SF2 | PGSC:PGSC0003DMG400027668 |
| RefSeq:XP_015160564.1 | SEG:seg | UniParc:UPI000296858C | UniProt:M1CN91 | MapMan:15.3.3.1.6 | : |
Description
RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027668]
Coordinates
chr6:+:57902292..57909262
Molecular Weight (calculated)
25477.1 Da
IEP (calculated)
10.416
GRAVY (calculated)
-1.560
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPDSKNFGR GPRELTGARD LISHFKLLPH YEFFGKRSLP LSISDTHYLH NVVGDTEIRK GEKMQLDQLT QDTSFSRETS SCIRPFDLDV LREAFQLRET
101: APVNLSPSDK GTPTIAGKSK SEMKDKEKKE KKHKKHKDKD KEKDKEHKKH KHRHKDRSKD KDKEKKKDKS GHNDPGAEHS KKHEKKRKHD EEDLNGIHKH
201: KKSKHRSSKI DEIGSIKVAG
101: APVNLSPSDK GTPTIAGKSK SEMKDKEKKE KKHKKHKDKD KEKDKEHKKH KHRHKDRSKD KDKEKKKDKS GHNDPGAEHS KKHEKKRKHD EEDLNGIHKH
201: KKSKHRSSKI DEIGSIKVAG
001: MEPERLKFGG PRELCGAADL ISQFKLVQHH EFFCKKSLPV SLSDSHYLHN VVGDTEIRKG EGMQLDQLIE SISQSRETNI RIQPFDIDEL QESFQLNDMT
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G
Arabidopsis Description
MED19AMediator of RNA polymerase II transcription subunit 19a [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.