Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P04140_001 | Banana | nucleus | 74.01 | 80.77 |
| GSMUA_Achr9P19370_001 | Banana | nucleus | 75.77 | 78.9 |
| TraesCS7B01G469600.1 | Wheat | nucleus | 66.52 | 74.38 |
| TraesCS7A01G546500.1 | Wheat | nucleus | 66.52 | 74.38 |
| Os12t0614000-01 | Rice | nucleus | 71.81 | 74.09 |
| TraesCS7D01G532700.1 | Wheat | nucleus | 66.08 | 73.89 |
| TraesCS5D01G045400.1 | Wheat | nucleus | 66.08 | 73.89 |
| TraesCS5A01G038000.1 | Wheat | nucleus | 66.08 | 73.89 |
| KXG23999 | Sorghum | nucleus | 70.48 | 73.73 |
| TraesCS5B01G039500.1 | Wheat | nucleus | 65.64 | 73.4 |
| TraesCS5A01G090300.1 | Wheat | nucleus | 61.23 | 70.92 |
| HORVU5Hr1G009530.1 | Barley | nucleus | 66.08 | 70.42 |
| KRH47954 | Soybean | nucleus | 67.84 | 69.06 |
| Solyc06g007660.1.1 | Tomato | nucleus | 62.56 | 68.93 |
| KRH06516 | Soybean | nucleus | 67.4 | 68.92 |
| PGSC0003DMT400053217 | Potato | nucleus | 61.67 | 67.96 |
| KXG24984 | Sorghum | nucleus | 64.76 | 67.74 |
| Solyc09g020010.1.1 | Tomato | nucleus | 58.15 | 67.69 |
| Zm00001d032361_P001 | Maize | nucleus | 62.11 | 67.46 |
| Os03t0641700-02 | Rice | nucleus | 64.76 | 66.82 |
| CDY14004 | Canola | nucleus | 59.47 | 66.18 |
| CDX92526 | Canola | nucleus | 58.15 | 64.71 |
| PGSC0003DMT400071143 | Potato | nucleus | 62.56 | 64.55 |
| Solyc06g082900.2.1 | Tomato | nucleus | 62.56 | 64.55 |
| CDX78474 | Canola | nucleus | 62.56 | 64.25 |
| Bra006148.1-P | Field mustard | nucleus | 62.11 | 63.8 |
| CDX70456 | Canola | nucleus | 62.11 | 63.8 |
| AT5G12230.1 | Thale cress | nucleus | 61.67 | 63.35 |
| AT5G19480.3 | Thale cress | nucleus | 57.71 | 63.28 |
| Bra002239.1-P | Field mustard | nucleus | 59.03 | 63.21 |
| CDX97177 | Canola | nucleus | 59.47 | 62.21 |
| KRH51345 | Soybean | nucleus | 58.59 | 62.15 |
| CDX69696 | Canola | nucleus | 59.91 | 61.82 |
| VIT_00s0174g00320.t01 | Wine grape | nucleus | 41.85 | 61.69 |
| Bra008906.1-P | Field mustard | nucleus | 59.47 | 61.36 |
| PGSC0003DMT400074614 | Potato | nucleus | 41.85 | 60.9 |
| TraesCS5D01G384900.1 | Wheat | nucleus | 63.0 | 60.85 |
| TraesCS5B01G377400.1 | Wheat | nucleus | 63.0 | 59.83 |
| TraesCS5A01G375300.1 | Wheat | mitochondrion | 64.32 | 58.4 |
| GSMUA_Achr7P07140_001 | Banana | nucleus | 71.37 | 56.64 |
| KRH60658 | Soybean | nucleus | 58.59 | 56.6 |
| Zm00001d031065_P001 | Maize | cytosol | 63.0 | 54.37 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P31560_001 | EnsemblPlants:GSMUA_Achr4T31560_001 | EnsemblPlantsGene:GSMUA_Achr4G31560_001 | PANTHER:PTHR22536 | PANTHER:PTHR22536:SF2 | SEG:seg |
| UniParc:UPI0002961323 | UniProt:M0STR8 | MapMan:15.3.3.1.6 | : | : | : |
Description
nucleolar protein NOP5, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G31560_001]
Coordinates
chr4:-:28722302..28727462
Molecular Weight (calculated)
26011.7 Da
IEP (calculated)
10.302
GRAVY (calculated)
-1.471
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPEGKKFGR GPRELTGAVD LINHYKLLTH HDFFCKRNLP LSILDTHYLH NVVGETEIRK GEGMELDQLF HNAPYLREST AHIQPFDLEL LGQAFLLRDT
101: APIDLPSAAK GTPTISSKSK GDSKDKDRKH KKHKDKDKNK DKDKDKEHKK HKHRRKDRSK DKDKDKEKKK DKGGHHDSGG DHLKHHEKRK HEGNEDSTDT
201: HKHKKSKHKN SEVVAVGGKI LPADKGR
101: APIDLPSAAK GTPTISSKSK GDSKDKDRKH KKHKDKDKNK DKDKDKEHKK HKHRRKDRSK DKDKDKEKKK DKGGHHDSGG DHLKHHEKRK HEGNEDSTDT
201: HKHKKSKHKN SEVVAVGGKI LPADKGR
001: MEPERLKFGG PRELCGAADL ISQFKLVQHH EFFCKKSLPV SLSDSHYLHN VVGDTEIRKG EGMQLDQLIE SISQSRETNI RIQPFDIDEL QESFQLNDMT
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G
Arabidopsis Description
MED19AMediator of RNA polymerase II transcription subunit 19a [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.