Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0614000-01 | Rice | nucleus | 95.39 | 94.09 |
| TraesCS5A01G038000.1 | Wheat | nucleus | 87.56 | 93.6 |
| TraesCS7D01G532700.1 | Wheat | nucleus | 87.1 | 93.1 |
| TraesCS7A01G546500.1 | Wheat | nucleus | 87.1 | 93.1 |
| TraesCS5D01G045400.1 | Wheat | nucleus | 87.1 | 93.1 |
| TraesCS7B01G469600.1 | Wheat | nucleus | 86.64 | 92.61 |
| TraesCS5B01G039500.1 | Wheat | nucleus | 85.71 | 91.63 |
| TraesCS5A01G090300.1 | Wheat | nucleus | 79.26 | 87.76 |
| HORVU5Hr1G009530.1 | Barley | nucleus | 84.33 | 85.92 |
| KRH06516 | Soybean | nucleus | 77.88 | 76.13 |
| KXG24984 | Sorghum | nucleus | 74.65 | 74.65 |
| Solyc09g020010.1.1 | Tomato | nucleus | 65.9 | 73.33 |
| GSMUA_Achr1P04140_001 | Banana | nucleus | 70.05 | 73.08 |
| Solyc06g007660.1.1 | Tomato | nucleus | 69.12 | 72.82 |
| KRH47954 | Soybean | nucleus | 74.65 | 72.65 |
| PGSC0003DMT400053217 | Potato | nucleus | 68.66 | 72.33 |
| GSMUA_Achr9P19370_001 | Banana | nucleus | 72.35 | 72.02 |
| GSMUA_Achr4P31560_001 | Banana | nucleus | 73.73 | 70.48 |
| PGSC0003DMT400074614 | Potato | nucleus | 50.23 | 69.87 |
| Solyc06g082900.2.1 | Tomato | nucleus | 69.59 | 68.64 |
| PGSC0003DMT400071143 | Potato | nucleus | 69.12 | 68.18 |
| CDX97177 | Canola | nucleus | 67.74 | 67.74 |
| AT5G19480.3 | Thale cress | nucleus | 64.52 | 67.63 |
| Zm00001d031065_P001 | Maize | cytosol | 81.11 | 66.92 |
| VIT_00s0174g00320.t01 | Wine grape | nucleus | 47.47 | 66.88 |
| CDY14004 | Canola | nucleus | 62.67 | 66.67 |
| CDX69696 | Canola | nucleus | 66.82 | 65.91 |
| CDX92526 | Canola | nucleus | 61.75 | 65.69 |
| Bra008906.1-P | Field mustard | nucleus | 66.36 | 65.45 |
| AT5G12230.1 | Thale cress | nucleus | 66.36 | 65.16 |
| CDX78474 | Canola | nucleus | 65.9 | 64.71 |
| Bra006148.1-P | Field mustard | nucleus | 65.9 | 64.71 |
| CDX70456 | Canola | nucleus | 65.44 | 64.25 |
| KRH51345 | Soybean | nucleus | 63.13 | 64.02 |
| Bra002239.1-P | Field mustard | nucleus | 60.83 | 62.26 |
| KRH60658 | Soybean | nucleus | 64.52 | 59.57 |
| GSMUA_Achr7P07140_001 | Banana | nucleus | 71.43 | 54.2 |
Protein Annotations
| EnsemblPlants:KXG23999 | EnsemblPlantsGene:SORBI_3008G170000 | PANTHER:PTHR22536 | PANTHER:PTHR22536:SF2 | ProteinID:KXG23999 | ProteinID:KXG23999.1 |
| SEG:seg | UniParc:UPI00081AE277 | UniProt:A0A1B6PE66 | MapMan:15.3.3.1.6 | : | : |
Description
hypothetical protein
Coordinates
chr8:+:60393588..60398840
Molecular Weight (calculated)
25017.3 Da
IEP (calculated)
10.018
GRAVY (calculated)
-1.635
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDDKKFGN GPRELTGAVD LISHYKLLPH HDFFCKKPLP LAISDTHYLH NVVGDTEIRK GEGMELDQLV QNAYMRDKPA YIQPFDMETL GQAFQLRETA
101: PVDLPSTEKG IPTISGKPKS ESKDKEKKHK KHKDKDRDKD KEHKKHKHRH KDRSKDKDKD KDKDKKKDKS GHHDSDSKKH HEKKRKHEGT EDSADVHKHK
201: KSKHKSSKTD ETGNGLS
101: PVDLPSTEKG IPTISGKPKS ESKDKEKKHK KHKDKDRDKD KEHKKHKHRH KDRSKDKDKD KDKDKKKDKS GHHDSDSKKH HEKKRKHEGT EDSADVHKHK
201: KSKHKSSKTD ETGNGLS
001: MESESVKFGG PRELGGALDL ITQYKLLPHH EFFCKRSLPE SLSDAHYLHN LVGDTEIRKG EGMQLDQLIP NASLSSRDTN ARIQPFVLDE LKEAFELNDT
101: APVELPPAEK GAPTTVSKSK SESKDKDRKH RKHKDKKEKD REHKKHKHKH KDRIKDKDKD KDRDKKKEKS GHHDKKRKNN GTEDADDVQR HKKSKHKSSK
201: LDEMGAM
101: APVELPPAEK GAPTTVSKSK SESKDKDRKH RKHKDKKEKD REHKKHKHKH KDRIKDKDKD KDRDKKKEKS GHHDKKRKNN GTEDADDVQR HKKSKHKSSK
201: LDEMGAM
Arabidopsis Description
MED19BProbable mediator of RNA polymerase II transcription subunit 19b [Source:UniProtKB/Swiss-Prot;Acc:Q6NQD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.