Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G023920.2 | Barley | cytosol, nucleus | 98.78 | 40.5 |
| TraesCS7B01G009300.1 | Wheat | nucleus | 74.39 | 23.55 |
| TraesCS5A01G215300.3 | Wheat | nucleus | 78.05 | 19.28 |
| TraesCS5D01G216700.1 | Wheat | nucleus | 71.95 | 17.66 |
| EER96069 | Sorghum | nucleus | 52.44 | 16.86 |
| EER97413 | Sorghum | nucleus | 46.34 | 14.9 |
| Os07t0213400-01 | Rice | nucleus, plastid | 47.56 | 14.66 |
| Zm00001d019181_P001 | Maize | nucleus | 45.12 | 14.4 |
| Zm00001d021873_P001 | Maize | nucleus | 42.68 | 13.57 |
| HORVU7Hr1G094990.2 | Barley | nucleus | 31.71 | 9.32 |
| GSMUA_Achr6P16520_001 | Banana | nucleus | 28.05 | 9.24 |
| KRH10674 | Soybean | nucleus | 28.05 | 7.67 |
| Bra001231.1-P | Field mustard | nucleus | 19.51 | 7.48 |
| KRH21674 | Soybean | nucleus | 25.61 | 7.12 |
| CDX68998 | Canola | nucleus | 20.73 | 6.85 |
| CDX74067 | Canola | nucleus | 18.29 | 6.73 |
| PGSC0003DMT400013080 | Potato | nucleus | 20.73 | 6.59 |
| AT4G33690.1 | Thale cress | nucleus | 19.51 | 6.5 |
| Bra011462.1-P | Field mustard | nucleus | 18.29 | 5.91 |
| VIT_03s0088g01000.t01 | Wine grape | nucleus | 29.27 | 5.71 |
| CDY08019 | Canola | mitochondrion, nucleus | 19.51 | 5.52 |
| CDX75374 | Canola | nucleus | 17.07 | 5.51 |
| CDY48229 | Canola | cytosol, mitochondrion | 9.76 | 5.26 |
| Solyc01g106560.2.1 | Tomato | nucleus | 18.29 | 4.89 |
| CDY22755 | Canola | extracellular | 6.1 | 4.1 |
| Bra023945.1-P | Field mustard | cytosol | 13.41 | 3.94 |
| CDY26345 | Canola | cytosol, nucleus, plastid | 12.2 | 3.33 |
| HORVU7Hr1G023800.2 | Barley | cytosol | 4.88 | 2.58 |
| CDX74406 | Canola | endoplasmic reticulum | 7.32 | 2.56 |
| CDY71888 | Canola | extracellular, golgi | 8.54 | 2.28 |
| CDY48061 | Canola | plastid | 8.54 | 2.05 |
| CDY16047 | Canola | golgi, plasma membrane | 6.1 | 1.66 |
| CDY43847 | Canola | nucleus | 3.66 | 1.56 |
| KRH50572 | Soybean | cytosol | 0.0 | 0.0 |
| HORVU7Hr1G023780.5 | Barley | cytosol | 0.0 | 0.0 |
| CDY48230 | Canola | cytosol, extracellular, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G023790.1 | EnsemblPlantsGene:HORVU7Hr1G023790 | ncoils:Coil | SEG:seg | UniParc:UPI000B484CFE | UniProt:A0A287VQ29 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:+:37321658..37321957
Molecular Weight (calculated)
10283.0 Da
IEP (calculated)
11.336
GRAVY (calculated)
-2.562
Length
82 amino acids
Sequence
(BLAST)
(BLAST)
1: EKWERRVQGP ERPLFLRSKS PDDSWHRETF LDNKASSSSE SHRKKENKKE RKSEKKERKE RKDKKKSKHH HRHHHHKSRR RE
001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGGR RSRRSRSRSK DRSERRTRSR SPSKSKQRVS GFDMAPPASA MLAAGAAVTG QVPPAPPTLP GAGMFPNMFP LPTGQSFGGL
201: SMMPIQAMTQ QATRHARRVY VGGLSPTANE QSVATFFSQV MAAVGGNTAG PGDAVVNVYI NHEKKFAFVE MRSVEEASNA MSLDGIIFEG APVKVRRPSD
301: YNPSLAATLG PSQPSPHLNL AAVGLTPGAS GGLEGPDRIF VGGLPYYFTE SQVRELLESF GGLKGFDLVK DRETGNSKGY AFCVYQDLSV TDIACAALNG
401: IKMGDKTLTV RRANQGTMLQ KPEQENVLLH AQQQIAFQRV MLQPGAVATT VVCLTQVVTE DELRDDEEYG DIMEDMRQEG GKFGALTNVV IPRPSPNGEP
501: VAGLGKVFLK YADTDGSTRA RFGMNGRKFG GNEVVAVYYP EDKFEQGDYG A
101: SRHRDHSRER GERRERGGGR RSRRSRSRSK DRSERRTRSR SPSKSKQRVS GFDMAPPASA MLAAGAAVTG QVPPAPPTLP GAGMFPNMFP LPTGQSFGGL
201: SMMPIQAMTQ QATRHARRVY VGGLSPTANE QSVATFFSQV MAAVGGNTAG PGDAVVNVYI NHEKKFAFVE MRSVEEASNA MSLDGIIFEG APVKVRRPSD
301: YNPSLAATLG PSQPSPHLNL AAVGLTPGAS GGLEGPDRIF VGGLPYYFTE SQVRELLESF GGLKGFDLVK DRETGNSKGY AFCVYQDLSV TDIACAALNG
401: IKMGDKTLTV RRANQGTMLQ KPEQENVLLH AQQQIAFQRV MLQPGAVATT VVCLTQVVTE DELRDDEEYG DIMEDMRQEG GKFGALTNVV IPRPSPNGEP
501: VAGLGKVFLK YADTDGSTRA RFGMNGRKFG GNEVVAVYYP EDKFEQGDYG A
Arabidopsis Description
U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.