Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75374 | Canola | nucleus | 81.85 | 79.92 |
| AT4G33690.1 | Thale cress | nucleus | 62.9 | 63.41 |
| CDX74067 | Canola | nucleus | 46.37 | 51.57 |
| CDY43847 | Canola | nucleus | 35.89 | 46.35 |
| CDY48230 | Canola | cytosol, extracellular, plastid | 19.35 | 43.24 |
| CDY08019 | Canola | mitochondrion, nucleus | 47.98 | 41.03 |
| TraesCS7D01G106500.1 | Wheat | nucleus | 41.94 | 40.78 |
| TraesCS7A01G111400.1 | Wheat | nucleus | 41.94 | 40.78 |
| TraesCS7B01G009300.1 | Wheat | nucleus | 41.94 | 40.15 |
| EER97413 | Sorghum | nucleus | 41.13 | 40.0 |
| TraesCS7A01G405900.1 | Wheat | nucleus | 40.32 | 39.84 |
| Zm00001d019181_P001 | Maize | nucleus | 41.13 | 39.69 |
| PGSC0003DMT400013080 | Potato | nucleus | 41.13 | 39.53 |
| TraesCS7B01G305800.3 | Wheat | nucleus | 39.52 | 39.36 |
| Zm00001d021873_P001 | Maize | nucleus | 40.32 | 38.76 |
| Os07t0213400-01 | Rice | nucleus, plastid | 41.53 | 38.72 |
| EER96069 | Sorghum | nucleus | 39.11 | 38.04 |
| KRH21674 | Soybean | nucleus | 43.15 | 36.27 |
| HORVU7Hr1G094990.2 | Barley | nucleus | 40.32 | 35.84 |
| HORVU7Hr1G023800.2 | Barley | cytosol | 22.18 | 35.48 |
| KRH10674 | Soybean | nucleus | 41.94 | 34.67 |
| CDY26345 | Canola | cytosol, nucleus, plastid | 40.32 | 33.33 |
| Solyc01g106560.2.1 | Tomato | nucleus | 41.13 | 33.22 |
| HORVU7Hr1G023920.2 | Barley | cytosol, nucleus | 25.81 | 32.0 |
| TraesCS5D01G216700.1 | Wheat | nucleus | 41.94 | 31.14 |
| TraesCS5A01G215300.3 | Wheat | nucleus | 41.53 | 31.02 |
| Os08t0192200-01 | Rice | nucleus | 11.69 | 30.53 |
| HORVU7Hr1G023780.5 | Barley | cytosol | 14.52 | 30.0 |
| CDY71888 | Canola | extracellular, golgi | 35.89 | 28.99 |
| CDY48061 | Canola | plastid | 36.69 | 26.69 |
| VIT_03s0088g01000.t01 | Wine grape | nucleus | 42.34 | 25.0 |
| CDY16047 | Canola | golgi, plasma membrane | 26.61 | 21.93 |
| CDX74406 | Canola | endoplasmic reticulum | 19.76 | 20.94 |
| HORVU7Hr1G023790.1 | Barley | cytosol, mitochondrion, nucleus | 6.85 | 20.73 |
| CDY22755 | Canola | extracellular | 10.08 | 20.49 |
| GSMUA_Achr6P16520_001 | Banana | nucleus | 18.15 | 18.07 |
| CDY48229 | Canola | cytosol, mitochondrion | 9.27 | 15.13 |
Protein Annotations
| EnsemblPlants:CDX68998 | EnsemblPlantsGene:GSBRNA2T00130748001 | ncoils:Coil | PANTHER:PTHR34684 | ProteinID:CDX68998 | ProteinID:CDX68998.1 |
| SEG:seg | UniParc:UPI0004EDF56D | MapMan:35.2 | : | : | : |
Description
BnaC01g04550D
Coordinates
chrLK031789:+:2346654..2348325
Molecular Weight (calculated)
28979.1 Da
IEP (calculated)
10.830
GRAVY (calculated)
-1.474
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLETENRIA SILLREAAEL RRQAEKEGVR AYLEKPNVRH RPNSRFLTAT VLGVQQANKT VETDEMWRLR HAEIEFDQRL KRKSREVSNG SGQSEQGDRR
101: SFVKRCTSVD ENVTRSSPSS SQSRNKIWQP DGDDGEGLGD VEVETFLQSR VKRGRGSIGP MMDEPFPCLP VKEPSRTSDT RECKLVLQPE RRPILRHNTD
201: SSSSDDEQTH RKRKEHKQKR SKRHKSKEKK KDRKEKRREK KKRKHGRD
101: SFVKRCTSVD ENVTRSSPSS SQSRNKIWQP DGDDGEGLGD VEVETFLQSR VKRGRGSIGP MMDEPFPCLP VKEPSRTSDT RECKLVLQPE RRPILRHNTD
201: SSSSDDEQTH RKRKEHKQKR SKRHKSKEKK KDRKEKRREK KKRKHGRD
001: MDLETENRIA SILLREAAEL RRQAEKDGVR AYLEKPNVRH RPNSRFLTAT VLGVQQANKA VETNEMWSLR SKEIEFGERL KRKSRDESSN GQSEQNNRRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD
Arabidopsis Description
At4g33690 [Source:UniProtKB/TrEMBL;Acc:Q6NPE9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.