CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85408
CDX86235
CDX90483
CDX93546
CDX95043
CDY02176
CDY05631
CDY09638
CDY23090
CDY33903
CDY35590
CDY42967
CDY46740
CDY68533

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02720.1	CDX93546	AT1G08650.1	21798944
AT4G02720.1	CDX95043	AT1G08650.1	21798944
AT4G02720.1	CDY46740	AT1G08650.1	21798944
AT4G02720.1	CDY68533	AT1G08650.1	21798944
AT4G02720.1	CDX90483	AT4G17220.1	21798944
AT4G02720.1	CDY09638	AT4G17220.1	21798944
AT4G02720.1	CDY35590	AT4G17220.1	21798944
AT4G02720.1	CDY42967	AT4G17220.1	21798944
AT4G02720.1	CDX85408	AT5G49400.1	21798944
AT4G02720.1	CDX86235	AT5G49400.1	21798944
AT4G02720.1	CDY05631	AT5G49400.1	21798944
AT4G02720.1	CDY33903	AT5G49400.1	21798944
AT4G02720.1	CDY02176	AT5G61010.1	21798944
AT4G02720.1	CDY23090	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76672	Canola	nucleus	95.65	95.65
CDY11458	Canola	nucleus	95.65	95.65
Os09t0455400-01	Rice	cytosol, mitochondrion, nucleus	72.46	66.67
CDX91311	Canola	cytosol	86.96	57.69
CDY22074	Canola	nucleus	95.65	18.7
CDY21909	Canola	nucleus	94.2	18.31
CDY70496	Canola	nucleus	94.2	17.81
CDY58145	Canola	nucleus	92.75	17.73
CDY10535	Canola	nucleus	89.86	17.61
CDY53463	Canola	nucleus	91.3	16.62
AT4G02720.1	Thale cress	nucleus	86.96	14.22
VIT_07s0151g00910.t01	Wine grape	nucleus	76.81	11.3
KRH32028	Soybean	nucleus	79.71	11.29
GSMUA_Achr9P15340_001	Banana	nucleus	76.81	11.18
KRH71411	Soybean	nucleus	79.71	11.04
HORVU5Hr1G068120.2	Barley	nucleus	72.46	10.42
Zm00001d020706_P001	Maize	mitochondrion, nucleus, plastid	71.01	9.82
TraesCS5A01G237400.1	Wheat	plastid	73.91	9.71
TraesCS5B01G235300.1	Wheat	plastid	72.46	9.56
KXG35759	Sorghum	nucleus	71.01	9.51
TraesCS5D01G244100.1	Wheat	mitochondrion, nucleus, plastid	72.46	9.35
Solyc11g071660.1.1	Tomato	nucleus	71.01	9.16
PGSC0003DMT400097185	Potato	nucleus	71.01	9.12
HORVU5Hr1G068130.1	Barley	nucleus, plastid	72.46	8.96

Protein Annotations

EnsemblPlants:CDY42264	EnsemblPlantsGene:GSBRNA2T00074500001	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0006139
GO:GO:0007154	GO:GO:0007165	GO:GO:0007219	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:NKAP	PANTHER:PTHR13087	PANTHER:PTHR13087:SF0	PFAM:PF06047
ProteinID:CDY42264	ProteinID:CDY42264.1	UniParc:UPI0004EF231D	UniProt:A0A078HY45	MapMan:17.1.1.1.3	:

Description

BnaC02g08700DBnaC02g08700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HY45]

Coordinates

chrLK032520:-:785..2429

Molecular Weight (calculated)

7836.2 Da

IEP (calculated)

6.527

GRAVY (calculated)

-0.909

Length

69 amino acids

Sequence
(BLAST)

1: MNAIRIRKEN QVYSAEDKRA LAMFNYEEKA KREAKVMSDL SRLVQRHMGD ELGPNHDPFG AVKADGADD

Best Arabidopsis Sequence Match ( AT4G02720.1 )
(BLAST)

001: MTMNSLPRRF GKNHGYLDRD YRNGRRSGSD SDEELKGLSH EEYRRQKRLK MRKSAKFCFW ENTPSPPRDQ NEDSDENADE IQDKNGGERD DNSKGKERKG
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD

Arabidopsis Description

AT4g02720/T10P11_1 [Source:UniProtKB/TrEMBL;Acc:Q8S9I4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.