CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85408
CDX86235
CDX90483
CDX93546
CDX95043
CDY02176
CDY05631
CDY09638
CDY23090
CDY33903
CDY35590
CDY42967
CDY46740
CDY68533

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02720.1	CDX93546	AT1G08650.1	21798944
AT4G02720.1	CDX95043	AT1G08650.1	21798944
AT4G02720.1	CDY46740	AT1G08650.1	21798944
AT4G02720.1	CDY68533	AT1G08650.1	21798944
AT4G02720.1	CDX90483	AT4G17220.1	21798944
AT4G02720.1	CDY09638	AT4G17220.1	21798944
AT4G02720.1	CDY35590	AT4G17220.1	21798944
AT4G02720.1	CDY42967	AT4G17220.1	21798944
AT4G02720.1	CDX85408	AT5G49400.1	21798944
AT4G02720.1	CDX86235	AT5G49400.1	21798944
AT4G02720.1	CDY05631	AT5G49400.1	21798944
AT4G02720.1	CDY33903	AT5G49400.1	21798944
AT4G02720.1	CDY02176	AT5G61010.1	21798944
AT4G02720.1	CDY23090	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76672	Canola	nucleus	18.18	92.75
CDY11458	Canola	nucleus	18.18	92.75
CDY22074	Canola	nucleus	91.76	91.5
CDY21909	Canola	nucleus	92.05	91.27
CDY42264	Canola	nucleus	17.61	89.86
Os09t0455400-01	Rice	cytosol, mitochondrion, nucleus	17.05	80.0
CDX91311	Canola	cytosol	21.02	71.15
AT4G02720.1	Thale cress	nucleus	66.48	55.45
CDY53463	Canola	nucleus	58.24	54.09
CDY58145	Canola	nucleus	55.4	54.02
CDY70496	Canola	nucleus	53.12	51.23
KRH32028	Soybean	nucleus	57.67	41.68
KRH71411	Soybean	nucleus	57.39	40.56
HORVU5Hr1G068120.2	Barley	nucleus	53.12	38.96
VIT_07s0151g00910.t01	Wine grape	nucleus	51.42	38.59
GSMUA_Achr9P15340_001	Banana	nucleus	51.42	38.19
Zm00001d020706_P001	Maize	mitochondrion, nucleus, plastid	51.99	36.67
TraesCS5A01G237400.1	Wheat	plastid	53.12	35.62
TraesCS5B01G235300.1	Wheat	plastid	52.84	35.56
PGSC0003DMT400097185	Potato	nucleus	53.98	35.38
KXG35759	Sorghum	nucleus	51.7	35.34
Solyc11g071660.1.1	Tomato	nucleus	53.41	35.14
TraesCS5D01G244100.1	Wheat	mitochondrion, nucleus, plastid	52.27	34.39
HORVU5Hr1G068130.1	Barley	nucleus, plastid	53.12	33.51

Protein Annotations

MapMan:17.1.1.1.3	UniProt:A0A078F7X7	EnsemblPlants:CDY10535	ProteinID:CDY10535	ProteinID:CDY10535.1	GO:GO:0003674
GO:GO:0003682	GO:GO:0005488	GO:GO:0006139	GO:GO:0007154	GO:GO:0007165	GO:GO:0007219
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	EnsemblPlantsGene:GSBRNA2T00032489001
InterPro:NKAP	PFAM:PF06047	PANTHER:PTHR13087	PANTHER:PTHR13087:SF0	UniParc:UPI0004EE1705	SEG:seg

Description

BnaC03g70790DBnaC03g70790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F7X7]

Coordinates

chrLK032004:+:179293..180381

Molecular Weight (calculated)

40652.0 Da

IEP (calculated)

9.599

GRAVY (calculated)

-1.651

Length

352 amino acids

Sequence
(BLAST)

001: MTMNSLPRRF GRDQGYLDRD RRRGRRSGSD SDEELKGLSH EEHRRLKRLK MRKSGKHCIW RNTPSPPRDP NEEVPEKDEE DPKSESGKSE SESDRSRKKR
101: KSKSSRSKRR RYSDSESEDS ESDDSDEEDR RRKEKKKSSR KRRGHRRKRR YSDSDDESEI SASSSSGEER SKSKSKRDTD SKGKLEEAVK EPELDEEEMK
201: MIIESKKKAL PEDEEEEAEV GPMPLPKAEG HISYGGALRP GEGDAIAQYV QQGKRIPRRG EVGLNADEIQ RFEDLGYVMS GSRHQRMNAI RIRKENQVYS
301: AEDKRALAML NYEEKAKREA KVMSDLSRLV QRHMGEELGP NHDPFGAGKA DD

Best Arabidopsis Sequence Match ( AT4G02720.1 )
(BLAST)

001: MTMNSLPRRF GKNHGYLDRD YRNGRRSGSD SDEELKGLSH EEYRRQKRLK MRKSAKFCFW ENTPSPPRDQ NEDSDENADE IQDKNGGERD DNSKGKERKG
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD

Arabidopsis Description

AT4g02720/T10P11_1 [Source:UniProtKB/TrEMBL;Acc:Q8S9I4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.