CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85408
CDX86235
CDX90483
CDX93546
CDX95043
CDY02176
CDY05631
CDY09638
CDY23090
CDY33903
CDY35590
CDY42967
CDY46740
CDY68533

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02720.1	CDX93546	AT1G08650.1	21798944
AT4G02720.1	CDX95043	AT1G08650.1	21798944
AT4G02720.1	CDY46740	AT1G08650.1	21798944
AT4G02720.1	CDY68533	AT1G08650.1	21798944
AT4G02720.1	CDX90483	AT4G17220.1	21798944
AT4G02720.1	CDY09638	AT4G17220.1	21798944
AT4G02720.1	CDY35590	AT4G17220.1	21798944
AT4G02720.1	CDY42967	AT4G17220.1	21798944
AT4G02720.1	CDX85408	AT5G49400.1	21798944
AT4G02720.1	CDX86235	AT5G49400.1	21798944
AT4G02720.1	CDY05631	AT5G49400.1	21798944
AT4G02720.1	CDY33903	AT5G49400.1	21798944
AT4G02720.1	CDY02176	AT5G61010.1	21798944
AT4G02720.1	CDY23090	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76672	Canola	nucleus	18.28	95.65
CDY11458	Canola	nucleus	18.28	95.65
CDY42264	Canola	nucleus	17.73	92.75
Os09t0455400-01	Rice	cytosol, mitochondrion, nucleus	16.9	81.33
CDX91311	Canola	cytosol	21.05	73.08
CDY22074	Canola	nucleus	54.29	55.52
CDY21909	Canola	nucleus	54.57	55.49
CDY10535	Canola	nucleus	54.02	55.4
CDY53463	Canola	nucleus	50.14	47.76
AT4G02720.1	Thale cress	nucleus	55.12	47.16
CDY70496	Canola	nucleus	44.32	43.84
KRH71411	Soybean	nucleus	47.09	34.14
HORVU5Hr1G068120.2	Barley	nucleus	45.15	33.96
KRH32028	Soybean	nucleus	45.71	33.88
VIT_07s0151g00910.t01	Wine grape	nucleus	42.94	33.05
GSMUA_Achr9P15340_001	Banana	nucleus	42.94	32.7
Zm00001d020706_P001	Maize	mitochondrion, nucleus, plastid	44.6	32.26
TraesCS5B01G235300.1	Wheat	plastid	45.98	31.74
KXG35759	Sorghum	nucleus	44.6	31.26
TraesCS5A01G237400.1	Wheat	plastid	45.15	31.05
TraesCS5D01G244100.1	Wheat	mitochondrion, nucleus, plastid	45.15	30.47
Solyc11g071660.1.1	Tomato	nucleus	44.04	29.72
PGSC0003DMT400097185	Potato	nucleus	43.77	29.42
HORVU5Hr1G068130.1	Barley	nucleus, plastid	45.15	29.21

Protein Annotations

MapMan:17.1.1.1.3	UniProt:A0A078J342	EnsemblPlants:CDY58145	ProteinID:CDY58145	ProteinID:CDY58145.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0006139	GO:GO:0007154	GO:GO:0007165
GO:GO:0007219	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892
EnsemblPlantsGene:GSBRNA2T00023166001	InterPro:NKAP	PFAM:PF06047	PANTHER:PTHR13087	PANTHER:PTHR13087:SF0	UniParc:UPI0004EE32B3
SEG:seg	:	:	:	:	:

Description

BnaCnng32680DBnaCnng32680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J342]

Coordinates

chrLK033640:-:16274..17613

Molecular Weight (calculated)

41618.3 Da

IEP (calculated)

10.490

GRAVY (calculated)

-1.680

Length

361 amino acids

Sequence
(BLAST)

001: MSPPPNESDE ELKGVSYQEY RRLKRIKMRN TPRDPNADER DDDNLPKAKV ESDSGKSQSE TDRSRKRRGR RSYDSDSESV ESDSDEEDRR RQRSRRKIKS
101: KSSRRSEERR KRKKSTSIRK KRRYSDSESE ISASSSGDEQ QHTKSKIKRL KKLSGDEEED RGRRTSNKKK GSRKKRGHRS ASGEEHSRSK SKRRKKLSGD
201: GSDTDLKAKL EEKVKDTELE LKKFREEEEA EVGPKAEGHM SGYGPALRPG EGDAIAQYVQ QGKRIPRRGE VGLNADEIQR FEDLGYVMSG SRHQRMNAIR
301: IRKENQVYSA EDKRALAMFN YEEKAKREAK VMSDLSRLVQ RHMGEELGPN HDPFGAGKAD D

Best Arabidopsis Sequence Match ( AT4G02720.1 )
(BLAST)

001: MTMNSLPRRF GKNHGYLDRD YRNGRRSGSD SDEELKGLSH EEYRRQKRLK MRKSAKFCFW ENTPSPPRDQ NEDSDENADE IQDKNGGERD DNSKGKERKG
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD

Arabidopsis Description

AT4g02720/T10P11_1 [Source:UniProtKB/TrEMBL;Acc:Q8S9I4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.