CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER95273
EES05452
EES07722
EES11118
KXG33434
KXG36793

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02720.1	EES05452	AT1G08650.1	21798944
AT4G02720.1	EES07722	AT1G08650.1	21798944
AT4G02720.1	EES11118	AT1G08650.1	21798944
AT4G02720.1	EER95273	AT4G17220.1	21798944
AT4G02720.1	KXG36793	AT5G49400.1	21798944
AT4G02720.1	KXG33434	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0455400-01	Rice	cytosol, mitochondrion, nucleus	14.17	97.33
Zm00001d020706_P001	Maize	mitochondrion, nucleus, plastid	91.26	94.19
CDX76672	Canola	nucleus	9.51	71.01
CDY11458	Canola	nucleus	9.51	71.01
CDY42264	Canola	nucleus	9.51	71.01
TraesCS5B01G235300.1	Wheat	plastid	70.87	69.79
TraesCS5A01G237400.1	Wheat	plastid	70.87	69.52
TraesCS5D01G244100.1	Wheat	mitochondrion, nucleus, plastid	71.84	69.16
HORVU5Hr1G068130.1	Barley	nucleus, plastid	70.68	65.23
HORVU5Hr1G068120.2	Barley	nucleus	57.67	61.88
CDX91311	Canola	cytosol	11.65	57.69
GSMUA_Achr9P15340_001	Banana	nucleus	50.29	54.64
CDY10535	Canola	nucleus	35.34	51.7
CDY22074	Canola	nucleus	35.34	51.56
CDY21909	Canola	nucleus	35.15	50.99
Bra036246.1-P	Field mustard	nucleus	35.92	50.27
Bra007711.1-P	Field mustard	nucleus	28.74	49.17
KRH32028	Soybean	nucleus	46.41	49.08
KRH71411	Soybean	nucleus	46.99	48.59
VIT_07s0151g00910.t01	Wine grape	nucleus	43.3	47.55
AT4G02720.1	Thale cress	nucleus	37.48	45.73
CDY58145	Canola	nucleus	31.26	44.6
CDY70496	Canola	nucleus	30.87	43.56
CDY53463	Canola	nucleus	30.87	41.95
PGSC0003DMT400097185	Potato	nucleus	42.72	40.97
Bra032050.1-P	Field mustard	nucleus	30.29	40.94
Solyc11g071660.1.1	Tomato	nucleus	42.33	40.75

Protein Annotations

MapMan:17.1.1.1.3	UniProt:A0A1B6QCW3	ncoils:Coil	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005731
GO:GO:0006139	GO:GO:0006259	GO:GO:0007154	GO:GO:0007165	GO:GO:0007219	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0044030	GO:GO:0045892	GO:GO:2000232
EnsemblPlants:KXG35759	ProteinID:KXG35759	ProteinID:KXG35759.1	InterPro:NKAP	PFAM:PF06047	PANTHER:PTHR13087
PANTHER:PTHR13087:SF0	EnsemblPlantsGene:SORBI_3002G224700	UniParc:UPI00081ACB42	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:61647059..61649112

Molecular Weight (calculated)

59703.5 Da

IEP (calculated)

10.388

GRAVY (calculated)

-1.699

Length

515 amino acids

Sequence
(BLAST)

001: MSHRSERRLA SAVVRLPGRS RVSASPSPRR RSQSPSPRRD RRRRDRSPIP YRDRSPSPYR NRRRDRSPSP YQDRRGRSPS PYRDRRGRSP SPYRDRRRQW
101: SPYHNDRGRD RDRVPPVRSG GGAWSDDDDD DKELQGLSYF DYRRLKRQKL RKSKKRCIWN ITPSPPRVEG DEENYGYSDV EEEKASPKGS PEASEEESKD
201: ASESESGESD SLSESSESEA SKRKKKGRKS SRHRSKRSRR RHRHRSYNSE IEDESESDDD SEGSYDSEDS RDRSKKRSRR HNRSKKRGRS SRRKKRRSQD
301: TASEQSSEEE EEEEEEEDSK KKSKSSKRKR SKRSDSEESV PSDATPVDAK EIEETIVPEI DPEAIKFKEM LEAQKKAALE NDMPVGPMPL PRAEGHISYG
401: GALRPGEGDA IAQYVQQGKR IPRRGEVGLS AEEIQKFEDL GYVMSGSRHQ RMNAIRIRKE NQVYSAEDKR ALAMFNYEEK SKREHKVMAD LQRLVQRTIG
501: HDVGPSHDPF ATTDG

Best Arabidopsis Sequence Match ( AT4G02720.1 )
(BLAST)

001: MTMNSLPRRF GKNHGYLDRD YRNGRRSGSD SDEELKGLSH EEYRRQKRLK MRKSAKFCFW ENTPSPPRDQ NEDSDENADE IQDKNGGERD DNSKGKERKG
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD

Arabidopsis Description

AT4g02720/T10P11_1 [Source:UniProtKB/TrEMBL;Acc:Q8S9I4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.