Factsheet for Bra007711.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010037.1-P
Bra012987.1-P
Bra018609.1-P
Bra020636.1-P
Bra026236.1-P
Bra030737.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02720.1	Bra018609.1-P	AT1G08650.1	21798944
AT4G02720.1	Bra030737.1-P	AT1G08650.1	21798944
AT4G02720.1	Bra026236.1-P	AT4G17220.1	21798944
AT4G02720.1	Bra010037.1-P	AT5G49400.1	21798944
AT4G02720.1	Bra020636.1-P	AT5G49400.1	21798944
AT4G02720.1	Bra012987.1-P	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76672	Canola	nucleus	22.92	100.0
Os09t0455400-01	Rice	cytosol, mitochondrion, nucleus	20.27	81.33
Bra036246.1-P	Field mustard	nucleus	72.76	59.51
AT4G02720.1	Thale cress	nucleus	62.46	44.55
Bra032050.1-P	Field mustard	nucleus	53.16	41.99
KRH71411	Soybean	nucleus	54.82	33.13
KRH32028	Soybean	nucleus	53.49	33.06
HORVU5Hr1G068120.2	Barley	nucleus	51.16	32.08
GSMUA_Achr9P15340_001	Banana	nucleus	48.51	30.8
VIT_07s0151g00910.t01	Wine grape	nucleus	47.18	30.28
Zm00001d020706_P001	Maize	mitochondrion, nucleus, plastid	49.5	29.86
TraesCS5A01G237400.1	Wheat	plastid	51.83	29.71
TraesCS5B01G235300.1	Wheat	plastid	50.83	29.25
KXG35759	Sorghum	nucleus	49.17	28.74
TraesCS5D01G244100.1	Wheat	mitochondrion, nucleus, plastid	50.83	28.6
PGSC0003DMT400097185	Potato	nucleus	50.5	28.31
Solyc11g071660.1.1	Tomato	nucleus	50.17	28.22
HORVU5Hr1G068130.1	Barley	nucleus, plastid	51.16	27.6

Protein Annotations

EnsemblPlants:Bra007711.1	EnsemblPlants:Bra007711.1-P	EnsemblPlantsGene:Bra007711	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488
GO:GO:0006139	GO:GO:0007154	GO:GO:0007165	GO:GO:0007219	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	InterPro:NKAP	PANTHER:PTHR13087	PANTHER:PTHR13087:SF0
PFAM:PF06047	SEG:seg	UniParc:UPI0002542B3F	UniProt:M4CU17	MapMan:17.1.1.1.3	:

Description

AT4G02720 (E=3e-057) | unknown protein

Coordinates

chrA09:+:30500957..30501970

Molecular Weight (calculated)

35470.3 Da

IEP (calculated)

9.916

GRAVY (calculated)

-1.587

Length

301 amino acids

Sequence
(BLAST)

001: MTMNSLPRRF GRDQGYVYRD HHRGRRSGSE SDDELKGISH EEYRRLKRLK MRKSGKYCIW ENTPSPPRDP YEVESDENDD EVPEKDVDDQ KLKGESESSK
101: SESESDRSRK KRKSKRSRSK RRRYNDSESE ESESDDSDEE DRRRRKKKKK RRGQRELQLP KTKKEKLRWD QCRYLKLKDT SVTVVVCEGD AIAQYVQQGK
201: RIPRRGEVGL NADEIQRFED LGYVMSGSRH QRMNAIRIRK ENQVYSAEDK RALAMFNYEE KAKREAKVMS DLSRLVQRHM GEELGPNHDP FGAGKTDGAD
301: D

Best Arabidopsis Sequence Match ( AT4G02720.1 )
(BLAST)

001: MTMNSLPRRF GKNHGYLDRD YRNGRRSGSD SDEELKGLSH EEYRRQKRLK MRKSAKFCFW ENTPSPPRDQ NEDSDENADE IQDKNGGERD DNSKGKERKG
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD

Arabidopsis Description

AT4g02720/T10P11_1 [Source:UniProtKB/TrEMBL;Acc:Q8S9I4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.