Factsheet for PGSC0003DMT400097185

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029874
PGSC0003DMT400029962
PGSC0003DMT400034592
PGSC0003DMT400038827
PGSC0003DMT400060165
PGSC0003DMT400063083

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02720.1	PGSC0003DMT400029874	AT1G08650.1	21798944
AT4G02720.1	PGSC0003DMT400029962	AT1G08650.1	21798944
AT4G02720.1	PGSC0003DMT400060165	AT1G08650.1	21798944
AT4G02720.1	PGSC0003DMT400034592	AT4G17220.1	21798944
AT4G02720.1	PGSC0003DMT400038827	AT4G17220.1	21798944
AT4G02720.1	PGSC0003DMT400063083	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g071660.1.1	Tomato	nucleus	95.9	96.26
Os09t0455400-01	Rice	cytosol, mitochondrion, nucleus	11.73	84.0
CDX76672	Canola	nucleus	9.12	71.01
CDY11458	Canola	nucleus	9.12	71.01
CDY42264	Canola	nucleus	9.12	71.01
CDX91311	Canola	cytosol	10.99	56.73
CDY22074	Canola	nucleus	35.57	54.11
CDY10535	Canola	nucleus	35.38	53.98
CDY21909	Canola	nucleus	35.2	53.24
Bra036246.1-P	Field mustard	nucleus	35.94	52.45
Bra007711.1-P	Field mustard	nucleus	28.31	50.5
VIT_07s0151g00910.t01	Wine grape	nucleus	43.76	50.11
KRH32028	Soybean	nucleus	44.69	49.28
KRH71411	Soybean	nucleus	44.88	48.39
AT4G02720.1	Thale cress	nucleus	36.5	46.45
GSMUA_Achr9P15340_001	Banana	nucleus	39.85	45.15
Zm00001d020706_P001	Maize	mitochondrion, nucleus, plastid	40.78	43.89
CDY58145	Canola	nucleus	29.42	43.77
KXG35759	Sorghum	nucleus	40.97	42.72
TraesCS5B01G235300.1	Wheat	plastid	41.53	42.64
TraesCS5A01G237400.1	Wheat	plastid	41.53	42.48
TraesCS5D01G244100.1	Wheat	mitochondrion, nucleus, plastid	41.53	41.68
HORVU5Hr1G068120.2	Barley	nucleus	37.24	41.67
CDY53463	Canola	nucleus	29.05	41.16
CDY70496	Canola	nucleus	27.56	40.55
Bra032050.1-P	Field mustard	nucleus	28.68	40.42
HORVU5Hr1G068130.1	Barley	nucleus, plastid	41.71	40.14

Protein Annotations

EntrezGene:102600204	MapMan:17.1.1.1.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005731
GO:GO:0006139	GO:GO:0006259	GO:GO:0007154	GO:GO:0007165	GO:GO:0007219	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0044030	GO:GO:0045892	GO:GO:2000232
UniProt:M1E033	InterPro:NKAP	PFAM:PF06047	EnsemblPlantsGene:PGSC0003DMG400046756	PGSC:PGSC0003DMG400046756	EnsemblPlants:PGSC0003DMT400097185
PANTHER:PTHR13087	PANTHER:PTHR13087:SF0	UniParc:UPI00029632DB	RefSeq:XP_006340298.1	SEG:seg	:

Description

ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400046756]

Coordinates

chr11:-:43141633..43143246

Molecular Weight (calculated)

61455.6 Da

IEP (calculated)

10.351

GRAVY (calculated)

-1.636

Length

537 amino acids

Sequence
(BLAST)

001: MGRLSSAVEI PDDRHRSHRD GDGGRYSPQR SSHYDNRRRY RSPSRSRSPV RNRNRSLSRS VSGSRSRSRS RSPVYSPYRG QQASHTNGRN NRRSFSPDRS
101: YRRPSPTNEP PRRFGRGKKP YLDRDHKSGR TADSDSDEEL KGLSFEEYRR LKRQKLRKQL KNCIWNCTPS PPRKENEPEY EEPDEIAEKI EDEMVKKEDG
201: SKKDVKKSKT KSSGSESNSK SESDASDSDS EASDSEPRKS RKRKKSSSRR RSRRSRRKSV SESEEESTDD SSEEEERNKR RKKSKRKESS GRHKRGSSSR
301: KKRSKKKSYS SESESKSKSE SEDGEIDDSD ASKKQKSALK SKKKKEEDSD IPEKSLELND DAGINEMKAD EAMIDEVNGE VLEFKELIEA RKRSNFEDEA
401: PVGPMPLPRA EGHISYGGAL RPGEGDAIAQ YVQQGKRIPR RGEVGLSADE ISKFEGLGYV MSGSRHQRMN AIRIRKENQV YSAEDKRALA MFNYEEKAKR
501: EQKVMADLQR LVQRHIGQDT ETSHDPFGGK STEAADD

Best Arabidopsis Sequence Match ( AT4G02720.1 )
(BLAST)

001: MTMNSLPRRF GKNHGYLDRD YRNGRRSGSD SDEELKGLSH EEYRRQKRLK MRKSAKFCFW ENTPSPPRDQ NEDSDENADE IQDKNGGERD DNSKGKERKG
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD

Arabidopsis Description

AT4g02720/T10P11_1 [Source:UniProtKB/TrEMBL;Acc:Q8S9I4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.