CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92624
KRH01966
KRH02335
KRH11576
KRH34157
KRH36588
KRH50753
KRH51187
KRH54704
KRH63230
KRH68799

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02720.1	KRG92624	AT1G08650.1	21798944
AT4G02720.1	KRH34157	AT1G08650.1	21798944
AT4G02720.1	KRH68799	AT1G08650.1	21798944
AT4G02720.1	KRH01966	AT4G17220.1	21798944
AT4G02720.1	KRH11576	AT4G17220.1	21798944
AT4G02720.1	KRH36588	AT4G17220.1	21798944
AT4G02720.1	KRH51187	AT4G17220.1	21798944
AT4G02720.1	KRH02335	AT5G49400.1	21798944
AT4G02720.1	KRH50753	AT5G49400.1	21798944
AT4G02720.1	KRH54704	AT5G61010.1	21798944
AT4G02720.1	KRH63230	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0455400-01	Rice	cytosol, mitochondrion, nucleus	14.17	92.0
KRH71411	Soybean	nucleus	89.32	87.35
CDX76672	Canola	nucleus	11.29	79.71
CDY11458	Canola	nucleus	11.29	79.71
CDY42264	Canola	nucleus	11.29	79.71
CDX91311	Canola	cytosol	13.14	61.54
CDY10535	Canola	nucleus	41.68	57.67
CDY22074	Canola	nucleus	41.48	57.22
CDY21909	Canola	nucleus	41.48	56.9
VIT_07s0151g00910.t01	Wine grape	nucleus	54.0	56.08
Bra036246.1-P	Field mustard	nucleus	42.09	55.71
Bra007711.1-P	Field mustard	nucleus	33.06	53.49
AT4G02720.1	Thale cress	nucleus	43.33	50.0
GSMUA_Achr9P15340_001	Banana	nucleus	47.43	48.73
Zm00001d020706_P001	Maize	mitochondrion, nucleus, plastid	49.49	48.3
HORVU5Hr1G068120.2	Barley	nucleus	46.0	46.67
KXG35759	Sorghum	nucleus	49.08	46.41
CDY70496	Canola	nucleus	34.7	46.3
TraesCS5A01G237400.1	Wheat	plastid	49.9	46.29
TraesCS5B01G235300.1	Wheat	plastid	49.49	46.08
CDY58145	Canola	nucleus	33.88	45.71
Solyc11g071660.1.1	Tomato	nucleus	49.28	44.86
TraesCS5D01G244100.1	Wheat	mitochondrion, nucleus, plastid	49.28	44.86
PGSC0003DMT400097185	Potato	nucleus	49.28	44.69
CDY53463	Canola	nucleus	34.7	44.59
Bra032050.1-P	Field mustard	nucleus	34.09	43.57
HORVU5Hr1G068130.1	Barley	nucleus, plastid	49.69	43.37

Protein Annotations

EntrezGene:100798821	MapMan:17.1.1.1.3	UniProt:A0A0R0HNG9	EMBL:ACUP02006093	EnsemblPlantsGene:GLYMA_10G027400	GO:GO:0003674
GO:GO:0003682	GO:GO:0005488	GO:GO:0006139	GO:GO:0007154	GO:GO:0007165	GO:GO:0007219
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	EnsemblPlants:KRH32028
ProteinID:KRH32028	ProteinID:KRH32028.1	InterPro:NKAP	PFAM:PF06047	PANTHER:PTHR13087	PANTHER:PTHR13087:SF0
UniParc:UPI0006EDE46E	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:2395402..2398137

Molecular Weight (calculated)

55966.1 Da

IEP (calculated)

10.195

GRAVY (calculated)

-1.644

Length

487 amino acids

Sequence
(BLAST)

001: MGRPSSTIEI PHERYRHNDR RTPDPDVSDD YRRRRSPSYD SYDRHPERRR RRSVSPEHRN PRHTNGTHND NALPKKFGRR NGAYLDRDRG DWQRSDSESD
101: EELKGLNFEE YRRLKRQKMR KSLKHCIWNV TPSPPRRENE DLEDYSKPDE ISDRNDGAGK IDTEVKAKTK AKPESESDSE SEKSASSESD DSRSRKKRRK
201: GSAGSSRKSY SESESESDSE SEEEERRRRK SRKNRRKRSN RSRKKRRYSD SDESEESESD DSESSGRKKK KRSSSSRSRS KRIRRSSKRT KGSSETESAG
301: SGSEEEENGS GDAKSKAMVD EVKMTEINAE AIKLKELFES QKKPALDNEP AVGPMPLPRA EGHISYGGEL RPGEGDAIAQ YVQQGKRIPR RGEVGLSAEE
401: IQKFENLGYV MSGSRHQRMN AIRIRKENQV YSAEDKRALA MFNYEEKAKR EHKVMADLQR LVQRHIGQDV GPTHDPFAAK ASDGADA

Best Arabidopsis Sequence Match ( AT4G02720.1 )
(BLAST)

001: MTMNSLPRRF GKNHGYLDRD YRNGRRSGSD SDEELKGLSH EEYRRQKRLK MRKSAKFCFW ENTPSPPRDQ NEDSDENADE IQDKNGGERD DNSKGKERKG
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD

Arabidopsis Description

AT4g02720/T10P11_1 [Source:UniProtKB/TrEMBL;Acc:Q8S9I4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.