Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G235300.1 | Wheat | plastid | 96.38 | 96.75 |
| TraesCS5D01G244100.1 | Wheat | mitochondrion, nucleus, plastid | 96.95 | 95.14 |
| Os09t0455400-01 | Rice | cytosol, mitochondrion, nucleus | 12.95 | 90.67 |
| HORVU5Hr1G068130.1 | Barley | nucleus, plastid | 95.24 | 89.61 |
| HORVU5Hr1G068120.2 | Barley | nucleus | 78.86 | 86.25 |
| CDX76672 | Canola | nucleus | 9.71 | 73.91 |
| CDY11458 | Canola | nucleus | 9.71 | 73.91 |
| CDY42264 | Canola | nucleus | 9.71 | 73.91 |
| Zm00001d020706_P001 | Maize | mitochondrion, nucleus, plastid | 68.76 | 72.34 |
| KXG35759 | Sorghum | nucleus | 69.52 | 70.87 |
| CDX91311 | Canola | cytosol | 11.62 | 58.65 |
| TraesCS7A01G262700.1 | Wheat | mitochondrion | 17.14 | 58.06 |
| GSMUA_Achr9P15340_001 | Banana | nucleus | 48.76 | 54.01 |
| CDY10535 | Canola | nucleus | 35.62 | 53.12 |
| CDY21909 | Canola | nucleus | 35.81 | 52.96 |
| CDY22074 | Canola | nucleus | 35.43 | 52.69 |
| Bra007711.1-P | Field mustard | nucleus | 29.71 | 51.83 |
| Bra036246.1-P | Field mustard | nucleus | 36.0 | 51.36 |
| KRH32028 | Soybean | nucleus | 46.29 | 49.9 |
| KRH71411 | Soybean | nucleus | 46.67 | 49.2 |
| AT4G02720.1 | Thale cress | nucleus | 37.71 | 46.92 |
| VIT_07s0151g00910.t01 | Wine grape | nucleus | 41.9 | 46.91 |
| CDY70496 | Canola | nucleus | 32.19 | 46.3 |
| CDY58145 | Canola | nucleus | 31.05 | 45.15 |
| Bra032050.1-P | Field mustard | nucleus | 31.24 | 43.04 |
| CDY53463 | Canola | nucleus | 30.29 | 41.95 |
| PGSC0003DMT400097185 | Potato | nucleus | 42.48 | 41.53 |
| Solyc11g071660.1.1 | Tomato | nucleus | 42.1 | 41.31 |
Protein Annotations
| MapMan:17.1.1.1.3 | GO:GO:0003674 | GO:GO:0003682 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005731 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007219 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0044030 | GO:GO:0045892 | GO:GO:2000232 | InterPro:NKAP | PFAM:PF06047 |
| PANTHER:PTHR13087 | PANTHER:PTHR13087:SF0 | EnsemblPlantsGene:TraesCS5A01G237400 | EnsemblPlants:TraesCS5A01G237400.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr5A:+:453343349..453344926
Molecular Weight (calculated)
60376.7 Da
IEP (calculated)
10.324
GRAVY (calculated)
-1.583
Length
525 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRTGSRLAS AVVRLPGRSR VSASPSPRRR SLSPSPSPRR QRRRDRSPIP SRDRRGERSP VPFRDRRRDR SPSPYRDRRR DRSPSPFRDR RRQWSPYHNE
101: RGRDMDRVRD VEPPARRGGG GGGEWSASDD DDEDLKGLTY FEYRRVKRQK LRKSLKKCIW KVTPSPPRRD DEADEYQYSE EEEEKDKKES PKKESSEKSD
201: EEENKDSSES ESDESGSLSD SSESDYCRKK KKGRKGRRSS SKRNKRAHRR HRKSDMESES DSKVDEDSEG SDDSEDSRDK RRSKRSRRHK KSKRRGRSSR
301: RKKSKSLDVP SDVSSEEVEV LVSSPISTDS KKMGKSSRKK SSSQSDSEDS IPSDAIIDEK EIEETDEPEI DPEAIKFKEM LEAQKKAALE NEMPVGPMPL
401: PRADGHISYG GALRPGEGDA IAQYVQQGKR IPRRGEVGLS ADEIQKFEDL GYVMSGSRHQ RMNAIRIRKE NQVYSAEDKR ALAMFNYEEK SKREHKVMAD
501: LQRLVSRTIG QETGPSHDPF AATDD
101: RGRDMDRVRD VEPPARRGGG GGGEWSASDD DDEDLKGLTY FEYRRVKRQK LRKSLKKCIW KVTPSPPRRD DEADEYQYSE EEEEKDKKES PKKESSEKSD
201: EEENKDSSES ESDESGSLSD SSESDYCRKK KKGRKGRRSS SKRNKRAHRR HRKSDMESES DSKVDEDSEG SDDSEDSRDK RRSKRSRRHK KSKRRGRSSR
301: RKKSKSLDVP SDVSSEEVEV LVSSPISTDS KKMGKSSRKK SSSQSDSEDS IPSDAIIDEK EIEETDEPEI DPEAIKFKEM LEAQKKAALE NEMPVGPMPL
401: PRADGHISYG GALRPGEGDA IAQYVQQGKR IPRRGEVGLS ADEIQKFEDL GYVMSGSRHQ RMNAIRIRKE NQVYSAEDKR ALAMFNYEEK SKREHKVMAD
501: LQRLVSRTIG QETGPSHDPF AATDD
001: MTMNSLPRRF GKNHGYLDRD YRNGRRSGSD SDEELKGLSH EEYRRQKRLK MRKSAKFCFW ENTPSPPRDQ NEDSDENADE IQDKNGGERD DNSKGKERKG
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD
Arabidopsis Description
AT4g02720/T10P11_1 [Source:UniProtKB/TrEMBL;Acc:Q8S9I4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.