Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G078900.2 | Wheat | nucleus | 93.22 | 93.22 |
| TraesCS4B01G245400.1 | Wheat | nucleus | 69.11 | 69.11 |
| HORVU4Hr1G067630.12 | Barley | nucleus | 66.29 | 67.05 |
| EER95273 | Sorghum | cytosol | 61.02 | 63.41 |
| Os03t0215700-01 | Rice | cytosol | 61.02 | 62.91 |
| Zm00001d028219_P001 | Maize | cytosol | 59.89 | 62.23 |
| PGSC0003DMT400034592 | Potato | cytosol | 28.06 | 56.65 |
| TraesCS2D01G554500.1 | Wheat | cytosol | 30.51 | 43.32 |
| PGSC0003DMT400038827 | Potato | cytosol | 39.55 | 41.58 |
| Solyc04g015010.2.1 | Tomato | cytosol | 38.04 | 41.48 |
| GSMUA_Achr7P26720_001 | Banana | cytosol | 39.17 | 40.39 |
| CDY42967 | Canola | cytosol, nucleus, plasma membrane | 35.4 | 37.6 |
| CDY09638 | Canola | cytosol | 35.22 | 37.18 |
| AT4G17220.1 | Thale cress | cytosol | 35.78 | 37.04 |
| CDX90483 | Canola | cytosol | 35.03 | 36.98 |
| Bra026236.1-P | Field mustard | cytosol | 34.46 | 36.82 |
| VIT_00s0194g00260.t01 | Wine grape | cytosol | 40.49 | 36.82 |
| CDY35590 | Canola | cytosol | 35.59 | 36.77 |
| Solyc11g012660.1.1 | Tomato | nucleus | 38.23 | 36.25 |
| KRH11576 | Soybean | cytosol | 38.79 | 36.08 |
| TraesCS5D01G000100.1 | Wheat | cytosol | 38.79 | 35.64 |
| KRH36588 | Soybean | cytosol | 38.23 | 35.55 |
| KRH51187 | Soybean | cytosol | 38.23 | 35.43 |
| KRH01966 | Soybean | mitochondrion | 35.59 | 33.51 |
| TraesCS6D01G278500.1 | Wheat | cytosol | 36.16 | 32.05 |
| TraesCS7D01G204000.1 | Wheat | nucleus | 36.35 | 31.8 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G244000.1 | EnsemblPlantsGene:TraesCS4D01G244000 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007010 |
| GO:GO:0008017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:MAP70 | ncoils:Coil |
| PANTHER:PTHR31246 | PANTHER:PTHR31246:SF5 | PFAM:PF07058 | SEG:seg | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr4D:+:408790320..408794324
Molecular Weight (calculated)
60249.0 Da
IEP (calculated)
8.602
GRAVY (calculated)
-1.015
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLGSEVDH GGREMFHGHA DPVVHELNRL ENLLREKERE LGHAYSEIKG LKVTEALKDK AIAELSKELK KQDERLSILE KQLEQKNLDV KRICNERKEA
101: LSAQFAAEAS LRRIHSAQRD EEVVPFDAII GPLESDIKKY KHEIAVLQDD KKALERHLKL NEAAFVEAGD ILRSALERAL IVEDVQNQNI ELKKQMEIYH
201: EENMLLEKSN RQKVLEIEKL THTVGELEES ILASRDVANA VHFYQNQATR LNVSEIDEEK KTLERELARA KVYVNRVATT TANEWKDDAD KLMPVKRWLE
301: ERRLLQGEIQ RLRDKIAIAE RSAKVEAQLN DKLKRRLKSL EEDMRNGKSN TPDSEANRKG TPKRSTSQPR QPSTPRMSQQ LASFEGIVDK RRPTSQPRAA
401: VGGKVLKQPN SDTEPAEKTR NIKQPDSPRA RTAAARKERP VRNQLWATRS KVTSDAGKEN KEQNPNYKPH SSAPHEQGHD ATKPQAAVFD ANGDCGVQRS
501: EHHKDMDLEN LDDKKADASN AESTQGGNRG N
101: LSAQFAAEAS LRRIHSAQRD EEVVPFDAII GPLESDIKKY KHEIAVLQDD KKALERHLKL NEAAFVEAGD ILRSALERAL IVEDVQNQNI ELKKQMEIYH
201: EENMLLEKSN RQKVLEIEKL THTVGELEES ILASRDVANA VHFYQNQATR LNVSEIDEEK KTLERELARA KVYVNRVATT TANEWKDDAD KLMPVKRWLE
301: ERRLLQGEIQ RLRDKIAIAE RSAKVEAQLN DKLKRRLKSL EEDMRNGKSN TPDSEANRKG TPKRSTSQPR QPSTPRMSQQ LASFEGIVDK RRPTSQPRAA
401: VGGKVLKQPN SDTEPAEKTR NIKQPDSPRA RTAAARKERP VRNQLWATRS KVTSDAGKEN KEQNPNYKPH SSAPHEQGHD ATKPQAAVFD ANGDCGVQRS
501: EHHKDMDLEN LDDKKADASN AESTQGGNRG N
001: MEERGFMSPS LAISASYREG GSKGMSRRRS MRPSFDADNE FMNLLHGSDP VRIELNRLEN EVRDKDRELS EGQAEIKALR LSERQREKAV EELTEELGKM
101: AEKLKLIENL LESKNLEIKK INEEKKASMA AQFAAEASLR RVHAAQKDDD MPPIEAILAP LEAELKLSRQ EIAKLQDDNK SLDRLTKSKE AALLDAERTV
201: QSALAKASMV DDLQNKNQEL MKQIEICQEE NRIIDKMHRQ KVAEVEKLMQ SVRELEEAVL AGGAAANAVR DYQRKFQEMN EERKILEREL ARAKVNANRV
301: ATVVANEWKD SNDKVMPVRQ WLEERRFLQG EMQQLRDKLA IADRAAKSEA QLKEKFLLRL RVLEESLKGP TSSSSRGTSV GRSSSNGPTR RQSLGGAETS
401: PKITSNGSLI KRTPSSQLRS LTASASTVLK HAKGTSRSFD GGTRSLDRSK VLINGPRSNF PLNHKSSEGT SRGESPSSIK GEEESADKAT NNDSVPGVLY
501: DLLQKEVITL RKAAHEKDQS LRDKDEAIEM LAKKVETLTK AMDVEAKKMR REVAVMGKEV AAMRVVDKGQ QDSKTRRLSV SKGNTAQLLS GRVSGRIGMT
601: RSTQ
101: AEKLKLIENL LESKNLEIKK INEEKKASMA AQFAAEASLR RVHAAQKDDD MPPIEAILAP LEAELKLSRQ EIAKLQDDNK SLDRLTKSKE AALLDAERTV
201: QSALAKASMV DDLQNKNQEL MKQIEICQEE NRIIDKMHRQ KVAEVEKLMQ SVRELEEAVL AGGAAANAVR DYQRKFQEMN EERKILEREL ARAKVNANRV
301: ATVVANEWKD SNDKVMPVRQ WLEERRFLQG EMQQLRDKLA IADRAAKSEA QLKEKFLLRL RVLEESLKGP TSSSSRGTSV GRSSSNGPTR RQSLGGAETS
401: PKITSNGSLI KRTPSSQLRS LTASASTVLK HAKGTSRSFD GGTRSLDRSK VLINGPRSNF PLNHKSSEGT SRGESPSSIK GEEESADKAT NNDSVPGVLY
501: DLLQKEVITL RKAAHEKDQS LRDKDEAIEM LAKKVETLTK AMDVEAKKMR REVAVMGKEV AAMRVVDKGQ QDSKTRRLSV SKGNTAQLLS GRVSGRIGMT
601: RSTQ
Arabidopsis Description
MAP70.4Microtubule-associated protein 70-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQU7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.