Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G180500.1 | |
| TraesCS6D01G164600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03140.1 | TraesCS6A01G180500.1 | AT4G32190.1 | 21798944 |
| AT1G03140.1 | TraesCS6D01G164600.1 | AT4G32190.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G224600.1 | Wheat | nucleus | 98.61 | 98.61 |
| TraesCS2D01G205000.1 | Wheat | nucleus | 99.54 | 95.55 |
| HORVU2Hr1G038180.2 | Barley | mitochondrion | 91.65 | 89.77 |
| Os07t0571900-01 | Rice | nucleus | 83.99 | 82.65 |
| Zm00001d025884_P001 | Maize | nucleus | 41.53 | 80.27 |
| EER99582 | Sorghum | nucleus | 80.74 | 79.45 |
| Zm00001d021867_P001 | Maize | nucleus | 80.74 | 79.27 |
| Zm00001d025878_P001 | Maize | nucleus | 70.53 | 78.55 |
| Zm00001d021864_P001 | Maize | nucleus | 79.81 | 78.18 |
| Zm00001d025877_P001 | Maize | nucleus | 45.48 | 69.01 |
| Bra041171.1-P | Field mustard | nucleus | 11.83 | 68.92 |
| GSMUA_Achr10P... | Banana | nucleus | 58.24 | 66.23 |
| KRH67222 | Soybean | nucleus | 60.09 | 62.71 |
| KRG95545 | Soybean | nucleus | 58.47 | 61.31 |
| Solyc09g065280.2.1 | Tomato | nucleus | 58.7 | 61.26 |
| VIT_07s0151g01010.t01 | Wine grape | nucleus | 58.47 | 61.16 |
| PGSC0003DMT400049840 | Potato | nucleus | 58.24 | 60.77 |
| AT1G03140.1 | Thale cress | nucleus | 56.61 | 58.1 |
| CDY37439 | Canola | nucleus | 52.67 | 56.61 |
| PGSC0003DMT400027500 | Potato | nucleus | 45.94 | 56.57 |
| Bra032556.1-P | Field mustard | nucleus | 54.29 | 56.39 |
| CDY32499 | Canola | nucleus | 52.67 | 56.05 |
| CDY15450 | Canola | nucleus | 55.22 | 56.0 |
| Bra030520.1-P | Field mustard | nucleus | 54.76 | 55.53 |
| Solyc07g052050.1.1 | Tomato | mitochondrion | 28.07 | 54.26 |
| TraesCS4A01G275400.1 | Wheat | cytosol | 47.33 | 52.85 |
| PGSC0003DMT400027505 | Potato | cytosol | 45.48 | 52.41 |
| Solyc07g052190.1.1 | Tomato | cytosol | 40.6 | 51.93 |
| AT1G54590.1 | Thale cress | nucleus | 40.84 | 48.75 |
| GSMUA_Achr1P22980_001 | Banana | nucleus | 27.61 | 47.04 |
Protein Annotations
| Gene3D:1.10.720.150 | Gene3D:1.20.940.10 | MapMan:35.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 |
| GO:GO:0009987 | InterPro:IPR036285 | PFAM:PF02840 | PFAM:PF08799 | InterPro:PRP4-like | InterPro:PRP4-like_sf |
| PANTHER:PTHR13007 | PANTHER:PTHR13007:SF23 | InterPro:Prp18 | SMART:SM00500 | SUPFAM:SSF158230 | SUPFAM:SSF47938 |
| EnsemblPlantsGene:TraesCS2A01G197100 | EnsemblPlants:TraesCS2A01G197100.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2A:+:166825702..166828917
Molecular Weight (calculated)
48212.5 Da
IEP (calculated)
8.096
GRAVY (calculated)
-0.744
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLRKELEK KRKAATADFG GKNFVRRSEL EDKQLQKRRQ IPAKVPSVPT PNSSAASDPT NSNADPAQAG GGNPNPSSSA AAASVPPALA GKKAPPEDTL
101: HSEERRIDEL VLPRNEVMRR LRVLREPVTL FGEDDADRLD RLKLVLKSGA IDDIDDLEMT EGQTNDFLRD MIELRMRQKA GRDAYGKGKG KRVGAGDGGE
201: GGALGDDVDE GDGDARRSGD DADADKDSKR MKTKFEELCD EDKILVFFKR LLNEWNQELD DMTELEKRSA KGKSMFATFK QCARYLSPLF EFCRKKVLPD
301: DIRKALLFIV DCCMKRDYLQ AMDQYIKLAI GNAPWPIGVT MVGIHERSAR EKIYTNSVAH IMNDETTRKY LQSIKRLMTL CQRRYPALPS KSVEFNSLAN
401: GSDLQALLSE EKNPTKGPSE DRLRLMPASK E
101: HSEERRIDEL VLPRNEVMRR LRVLREPVTL FGEDDADRLD RLKLVLKSGA IDDIDDLEMT EGQTNDFLRD MIELRMRQKA GRDAYGKGKG KRVGAGDGGE
201: GGALGDDVDE GDGDARRSGD DADADKDSKR MKTKFEELCD EDKILVFFKR LLNEWNQELD DMTELEKRSA KGKSMFATFK QCARYLSPLF EFCRKKVLPD
301: DIRKALLFIV DCCMKRDYLQ AMDQYIKLAI GNAPWPIGVT MVGIHERSAR EKIYTNSVAH IMNDETTRKY LQSIKRLMTL CQRRYPALPS KSVEFNSLAN
401: GSDLQALLSE EKNPTKGPSE DRLRLMPASK E
001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
Arabidopsis Description
F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.