CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68825
CDX70521
CDX75227
CDX78539
CDX81487
CDX81488
CDX81489
CDY61790
CDY61791
CDY67732
CDY70634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	CDX68825	AT4G32190.1	21798944
AT1G03140.1	CDX75227	AT4G32190.1	21798944
AT1G03140.1	CDX81487	AT4G32190.1	21798944
AT1G03140.1	CDX81488	AT4G32190.1	21798944
AT1G03140.1	CDX81489	AT4G32190.1	21798944
AT1G03140.1	CDY61790	AT4G32190.1	21798944
AT1G03140.1	CDY61791	AT4G32190.1	21798944
AT1G03140.1	CDX70521	AT5G13810.1	21798944
AT1G03140.1	CDX78539	AT5G13810.1	21798944
AT1G03140.1	CDY67732	AT5G13810.1	21798944
AT1G03140.1	CDY70634	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032556.1-P	Field mustard	nucleus	100.0	97.59
CDY37439	Canola	nucleus	96.05	97.01
CDY15450	Canola	nucleus	91.6	87.29
GSMUA_Achr1P22990_001	Banana	cytosol	23.46	81.9
AT1G03140.1	Thale cress	nucleus	82.22	79.29
VIT_07s0151g01010.t01	Wine grape	nucleus	70.62	69.42
KRG95545	Soybean	nucleus	69.88	68.86
KRH67222	Soybean	nucleus	68.89	67.55
Solyc09g065280.2.1	Tomato	nucleus	67.16	65.86
PGSC0003DMT400049840	Potato	nucleus	67.16	65.86
GSMUA_Achr10P...	Banana	nucleus	60.74	64.91
Zm00001d025884_P001	Maize	nucleus	33.09	60.09
Zm00001d025878_P001	Maize	nucleus	56.79	59.43
PGSC0003DMT400027500	Potato	nucleus	49.88	57.71
Os07t0571900-01	Rice	nucleus	60.74	56.16
AT1G54590.1	Thale cress	nucleus	49.63	55.68
PGSC0003DMT400027505	Potato	cytosol	51.36	55.62
EER99582	Sorghum	nucleus	59.51	55.02
Zm00001d021867_P001	Maize	nucleus	59.26	54.67
Zm00001d021864_P001	Maize	nucleus	59.26	54.55
KXG37778	Sorghum	cytosol, mitochondrion, nucleus, plastid	50.12	54.13
Zm00001d013489_P001	Maize	cytosol, mitochondrion, nucleus, plastid	49.88	53.72
TraesCS2B01G224600.1	Wheat	nucleus	56.54	53.13
TraesCS2A01G197100.1	Wheat	nucleus	56.05	52.67
Solyc07g052050.1.1	Tomato	mitochondrion	28.89	52.47
TraesCS4A01G275400.1	Wheat	cytosol	49.63	52.07
Solyc07g052190.1.1	Tomato	cytosol	43.21	51.93
TraesCS4D01G035800.1	Wheat	nucleus	49.14	51.82
TraesCS4B01G038900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	48.64	51.57
TraesCS2D01G205000.1	Wheat	nucleus	56.3	50.78
HORVU2Hr1G038180.2	Barley	mitochondrion	54.57	50.23
Zm00001d025877_P001	Maize	nucleus	33.33	47.54
GSMUA_Achr1P22980_001	Banana	nucleus	29.63	47.43
Os03t0701100-01	Rice	cytosol, nucleus, plastid	27.16	34.59
HORVU4Hr1G006120.1	Barley	mitochondrion	19.26	20.53

Protein Annotations

Gene3D:1.10.720.150	Gene3D:1.20.940.10	MapMan:35.2	GO:A0A078H520	UniProt:A0A078H520	EnsemblPlants:CDY32499
ProteinID:CDY32499	ProteinID:CDY32499.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00052479001	InterPro:IPR036285	PFAM:PF02840	PFAM:PF08799	InterPro:PRP4-like
InterPro:PRP4-like_sf	PANTHER:PTHR13007	PANTHER:PTHR13007:SF23	InterPro:Prp18	SMART:SM00500	SUPFAM:SSF158230
SUPFAM:SSF47938	UniParc:UPI0004EE8EBD	SEG:seg	:	:	:

Description

BnaA09g50970DBnaA09g50970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H520]

Coordinates

chrLK032295:-:267507..269258

Molecular Weight (calculated)

46318.1 Da

IEP (calculated)

9.198

GRAVY (calculated)

-0.883

Length

405 amino acids

Sequence
(BLAST)

001: MDLLRQEILK KRQSLSEEAG GKKFYKRSDI EQKKLQKLRE EERREHELKA QRRSAAAVSI SGGKQSGDSS APGSSTASET AAIADSKSLT DEKNIETLDL
101: PRHEVIRRLR ILKQPMTLFG EDDQARLDRL KYVLKEGLFD VDSDVTDGQT NDFLRDISEL KKRQKSGIMM GDRKRKKSSR DEEGDRGEAR DDDEISGESS
201: DVDADKDLKR LKSNFEELCD EDKILVFYKK LLIEWKQELD AVENTERRTA KGKKNVATFK QCARKKGLPS DIRQALMVMV NHCIKRDYLA AMDHYIKLAI
301: GNAPWPIGVT MVGIHERSAR EKIHTNSVAH IMNDETTRKY LQSVKRLMTF CQRRYPTMPS KAVEFNSLAN GSDLQSLLAE ERYFGGDRGQ VSEERLRLMA
401: PQNDN

Best Arabidopsis Sequence Match ( AT1G03140.1 )
(BLAST)

001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES

Arabidopsis Description

F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.