Factsheet for Zm00001d013489_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d053726_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	Zm00001d053726_P001	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37778	Sorghum	cytosol, mitochondrion, nucleus, plastid	82.71	82.93
GSMUA_Achr1P22990_001	Banana	cytosol	23.94	77.59
TraesCS4B01G038900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	69.15	68.06
TraesCS4D01G035800.1	Wheat	nucleus	68.88	67.45
TraesCS4A01G275400.1	Wheat	cytosol	69.15	67.36
Bra041171.1-P	Field mustard	nucleus	12.5	63.51
Zm00001d025884_P001	Maize	nucleus	32.18	54.26
Zm00001d025878_P001	Maize	nucleus	55.32	53.75
KRH67222	Soybean	nucleus	57.98	52.78
KRG95545	Soybean	nucleus	56.91	52.07
VIT_07s0151g01010.t01	Wine grape	nucleus	55.85	50.97
Os03t0701100-01	Rice	cytosol, nucleus, plastid	43.09	50.94
PGSC0003DMT400049840	Potato	nucleus	55.85	50.85
Solyc09g065280.2.1	Tomato	nucleus	55.32	50.36
CDY37439	Canola	nucleus	53.46	50.12
Bra032556.1-P	Field mustard	nucleus	55.32	50.12
CDY32499	Canola	nucleus	53.72	49.88
Zm00001d021867_P001	Maize	nucleus	57.45	49.2
AT1G03140.1	Thale cress	nucleus	54.79	49.05
Zm00001d021864_P001	Maize	nucleus	57.18	48.86
Solyc07g052050.1.1	Tomato	mitochondrion	28.72	48.43
PGSC0003DMT400027500	Potato	nucleus	44.95	48.29
CDY15450	Canola	nucleus	54.52	48.24
Bra030520.1-P	Field mustard	nucleus	53.99	47.76
Zm00001d006637_P001	Maize	cytosol	19.95	45.18
PGSC0003DMT400027505	Potato	cytosol	44.68	44.92
Solyc07g052190.1.1	Tomato	cytosol	39.89	44.51
Zm00001d025877_P001	Maize	nucleus	31.38	41.55
AT1G54590.1	Thale cress	nucleus	39.1	40.72
HORVU4Hr1G006120.1	Barley	mitochondrion	32.71	32.37

Protein Annotations

Gene3D:1.10.720.150	Gene3D:1.20.940.10	EntrezGene:103625968	MapMan:35.2	UniProt:A0A1D6GJX7	ProteinID:AQK63663.1
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	InterPro:IPR036285
PFAM:PF02840	PFAM:PF08799	InterPro:PRP4-like	InterPro:PRP4-like_sf	PANTHER:PTHR13007	PANTHER:PTHR13007:SF23
InterPro:Prp18	SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF47938	UniParc:UPI0004DE8228	EnsemblPlantsGene:Zm00001d013489
EnsemblPlants:Zm00001d013489_P001	EnsemblPlants:Zm00001d013489_T001	SEG:seg	:	:	:

Description

splicing factor Prp18 family protein

Coordinates

chr5:+:12657966..12661040

Molecular Weight (calculated)

42198.2 Da

IEP (calculated)

9.035

GRAVY (calculated)

-0.589

Length

376 amino acids

Sequence
(BLAST)

001: MDVLKRELQR KRQLLNADFG GRKIIRRAEI EARELQRIRE VERQLLLQKQ HRHSRPLSSP SSSSSSSSPT SAAADADADA SRAESGSKES LPREEVIRRL
101: RVLRQPATLF GEDDIARLRR LQVLIEDSGA LADIDAAEIG EGQTNDFLRD IQAMRAKAAT VTKPKAAGAE AERGEGDSVS IDVPFEELCD EDKITAFFRR
201: LLDEWTQEVD GMPEAERRTA KGKAAIATCK QCTRYLDPLF KQCKKKALPS DVRQALLEVV RCCRRRDYLA AVDNYIKLAI GNSPWPIGVT MVGIHERSAR
301: EKIYTNSVAH IMNDETTRKY LQSVKRLITF CQRKYPTDPS RSVEFNSLAN GSDLQSLLAQ QNAKNSEETL RLVAAS

Best Arabidopsis Sequence Match ( AT1G03140.1 )
(BLAST)

001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES

Arabidopsis Description

F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.