Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra006216.1-P | |
| Bra008801.1-P | |
| Bra011328.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03140.1 | Bra011328.1-P | AT4G32190.1 | 21798944 |
| AT1G03140.1 | Bra006216.1-P | AT5G13810.1 | 21798944 |
| AT1G03140.1 | Bra008801.1-P | AT5G13810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P22990_001 | Banana | cytosol | 70.27 | 44.83 |
| Zm00001d025884_P001 | Maize | nucleus | 67.57 | 22.42 |
| Bra030520.1-P | Field mustard | nucleus | 100.0 | 17.41 |
| CDY15450 | Canola | nucleus | 100.0 | 17.41 |
| Bra032556.1-P | Field mustard | nucleus | 93.24 | 16.63 |
| AT1G03140.1 | Thale cress | nucleus | 93.24 | 16.43 |
| AT1G54590.1 | Thale cress | nucleus | 75.68 | 15.51 |
| KRG95545 | Soybean | nucleus | 82.43 | 14.84 |
| VIT_07s0151g01010.t01 | Wine grape | nucleus | 82.43 | 14.81 |
| GSMUA_Achr10P... | Banana | nucleus | 75.68 | 14.78 |
| KRH67222 | Soybean | nucleus | 82.43 | 14.77 |
| PGSC0003DMT400027500 | Potato | nucleus | 68.92 | 14.57 |
| Solyc09g065280.2.1 | Tomato | nucleus | 81.08 | 14.53 |
| PGSC0003DMT400049840 | Potato | nucleus | 81.08 | 14.53 |
| TraesCS4B01G038900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 67.57 | 13.09 |
| TraesCS4D01G035800.1 | Wheat | nucleus | 67.57 | 13.02 |
| Solyc07g052050.1.1 | Tomato | mitochondrion | 39.19 | 13.0 |
| TraesCS4A01G275400.1 | Wheat | cytosol | 67.57 | 12.95 |
| Zm00001d025878_P001 | Maize | nucleus | 67.57 | 12.92 |
| KXG37778 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 63.51 | 12.53 |
| Zm00001d013489_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 63.51 | 12.5 |
| PGSC0003DMT400027505 | Potato | cytosol | 62.16 | 12.3 |
| EER99582 | Sorghum | nucleus | 71.62 | 12.1 |
| Zm00001d021867_P001 | Maize | nucleus | 71.62 | 12.07 |
| Os07t0571900-01 | Rice | nucleus | 70.27 | 11.87 |
| TraesCS2B01G224600.1 | Wheat | nucleus | 68.92 | 11.83 |
| TraesCS2A01G197100.1 | Wheat | nucleus | 68.92 | 11.83 |
| HORVU2Hr1G038180.2 | Barley | mitochondrion | 70.27 | 11.82 |
| Zm00001d021864_P001 | Maize | nucleus | 70.27 | 11.82 |
| TraesCS2D01G205000.1 | Wheat | nucleus | 70.27 | 11.58 |
| Solyc07g052190.1.1 | Tomato | cytosol | 37.84 | 8.31 |
| GSMUA_Achr1P22980_001 | Banana | nucleus | 0.0 | 0.0 |
| Zm00001d025877_P001 | Maize | nucleus | 0.0 | 0.0 |
| HORVU4Hr1G006120.1 | Barley | mitochondrion | 0.0 | 0.0 |
| Os03t0701100-01 | Rice | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Bra041171.1 | EnsemblPlants:Bra041171.1-P | EnsemblPlantsGene:Bra041171 | Gene3D:1.20.940.10 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008380 | GO:GO:0009987 | InterPro:Prp18 | PANTHER:PTHR13007 | PANTHER:PTHR13007:SF23 | PFAM:PF02840 |
| SUPFAM:SSF47938 | UniParc:UPI000253EDB8 | UniProt:M4FJ90 | MapMan:35.2 | : | : |
Description
AT1G03140 (E=3e-034) | splicing factor Prp18 family protein
Coordinates
chrScaffold004813:-:190..414
Molecular Weight (calculated)
8568.1 Da
IEP (calculated)
8.502
GRAVY (calculated)
-0.899
Length
74 amino acids
Sequence
(BLAST)
(BLAST)
1: MNDETTRKYL QSVKRLMTFC QRRYPTMPSK AVEFNSLANG SDLQSLLAEE RHFGGDRAQV SEERLRLMPS QNDS
001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
Arabidopsis Description
F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.