Factsheet for TraesCS4B01G038900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G180500.1
TraesCS6D01G164600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	TraesCS6A01G180500.1	AT4G32190.1	21798944
AT1G03140.1	TraesCS6D01G164600.1	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G035800.1	Wheat	nucleus	88.74	88.28
TraesCS4A01G275400.1	Wheat	cytosol	85.34	84.46
GSMUA_Achr1P22990_001	Banana	cytosol	23.3	76.72
KXG37778	Sorghum	cytosol, mitochondrion, nucleus, plastid	68.32	69.6
Zm00001d013489_P001	Maize	cytosol, mitochondrion, nucleus, plastid	68.06	69.15
Bra041171.1-P	Field mustard	nucleus	13.09	67.57
KRG95545	Soybean	nucleus	58.12	54.01
KRH67222	Soybean	nucleus	58.12	53.75
PGSC0003DMT400049840	Potato	nucleus	57.59	53.27
Solyc09g065280.2.1	Tomato	nucleus	57.59	53.27
VIT_07s0151g01010.t01	Wine grape	nucleus	55.76	51.7
Os03t0701100-01	Rice	cytosol, nucleus, plastid	42.41	50.94
PGSC0003DMT400027500	Potato	nucleus	45.81	50.0
Bra032556.1-P	Field mustard	nucleus	53.66	49.4
Solyc07g052050.1.1	Tomato	mitochondrion	28.8	49.33
CDY37439	Canola	nucleus	51.57	49.13
AT1G03140.1	Thale cress	nucleus	53.93	49.05
CDY15450	Canola	nucleus	54.19	48.71
CDY32499	Canola	nucleus	51.57	48.64
Bra030520.1-P	Field mustard	nucleus	53.4	48.0
TraesCS2B01G224600.1	Wheat	nucleus	53.93	47.8
PGSC0003DMT400027505	Potato	cytosol	45.55	46.52
Solyc07g052190.1.1	Tomato	cytosol	40.84	46.29
AT1G54590.1	Thale cress	nucleus	39.53	41.83
HORVU4Hr1G006120.1	Barley	mitochondrion	36.65	36.84

Protein Annotations

Gene3D:1.10.720.150	Gene3D:1.20.940.10	MapMan:35.2	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009987	InterPro:IPR036285	PFAM:PF02840	PFAM:PF08799	InterPro:PRP4-like
InterPro:PRP4-like_sf	PANTHER:PTHR13007	PANTHER:PTHR13007:SF23	InterPro:Prp18	SMART:SM00500	SUPFAM:SSF158230
SUPFAM:SSF47938	EnsemblPlantsGene:TraesCS4B01G038900	EnsemblPlants:TraesCS4B01G038900.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4B:+:27865711..27867090

Molecular Weight (calculated)

42644.7 Da

IEP (calculated)

8.854

GRAVY (calculated)

-0.666

Length

382 amino acids

Sequence
(BLAST)

001: MDVLKRELQR KRQQLDADFG GRKVLRRAEI EAREIQRLRV AEQERLLQKR QKEEQLRSNP AAASSSSSSM PALPPAAASD VAKADDRADG SRDSSSLPRE
101: EVVRRLRLLR QPATLFGEDD AARLRRLHDA LEDPAAVAGV DATEIGEGQT NDFLRDIQAP RGKAAAVASK PKPGAAERSG GEKDKDEVPF DELCDEDKIV
201: AFFKRLLGEW SQELDEMPDV ERRTARGKAA VATCKQCARY LEPLFKLCRK KDLPGDVRRA LLDVVRCCAR RDYLAATDAY IRMAIGNSPW PIGVTMVGIH
301: ERSAREKIHA NGVAHVMNDE TTRKYLQSVK RLMTFCQRRY PTDPSRSVEF NSLANGSDLQ SLLAEKGAEN RPEETLRLVA AS

Best Arabidopsis Sequence Match ( AT1G03140.1 )
(BLAST)

001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES

Arabidopsis Description

F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.