CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05183
KRH13399
KRH15859
KRH20755
KRH62918

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	KRH05183	AT4G32190.1	21798944
AT1G03140.1	KRH15859	AT4G32190.1	21798944
AT1G03140.1	KRH13399	AT5G13810.1	21798944
AT1G03140.1	KRH20755	AT5G13810.1	21798944
AT1G03140.1	KRH62918	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95545	Soybean	nucleus	89.35	89.78
Bra041171.1-P	Field mustard	nucleus	14.77	82.43
VIT_07s0151g01010.t01	Wine grape	nucleus	80.63	80.83
GSMUA_Achr1P22990_001	Banana	cytosol	22.52	80.17
GSMUA_Achr10P...	Banana	nucleus	69.25	75.46
PGSC0003DMT400049840	Potato	nucleus	74.09	74.09
Solyc09g065280.2.1	Tomato	nucleus	73.85	73.85
Zm00001d025884_P001	Maize	nucleus	38.01	70.4
AT1G03140.1	Thale cress	nucleus	71.43	70.24
CDY37439	Canola	nucleus	67.55	69.58
Bra032556.1-P	Field mustard	nucleus	69.25	68.92
CDY32499	Canola	nucleus	67.55	68.89
CDY15450	Canola	nucleus	70.7	68.71
Zm00001d025878_P001	Maize	nucleus	64.16	68.48
Bra030520.1-P	Field mustard	nucleus	70.22	68.24
PGSC0003DMT400027500	Potato	nucleus	53.03	62.57
Os07t0571900-01	Rice	nucleus	65.86	62.1
EER99582	Sorghum	nucleus	65.38	61.64
Zm00001d021864_P001	Maize	nucleus	65.62	61.59
Zm00001d021867_P001	Maize	nucleus	65.38	61.5
PGSC0003DMT400027505	Potato	cytosol	54.72	60.43
TraesCS2A01G197100.1	Wheat	nucleus	62.71	60.09
KXG37778	Sorghum	cytosol, mitochondrion, nucleus, plastid	54.48	60.0
TraesCS2B01G224600.1	Wheat	nucleus	62.47	59.86
TraesCS4A01G275400.1	Wheat	cytosol	54.48	58.29
TraesCS4B01G038900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	53.75	58.12
Zm00001d013489_P001	Maize	cytosol, mitochondrion, nucleus, plastid	52.78	57.98
TraesCS2D01G205000.1	Wheat	nucleus	62.95	57.91
TraesCS4D01G035800.1	Wheat	nucleus	53.51	57.55
GSMUA_Achr1P22980_001	Banana	nucleus	35.11	57.31
Zm00001d025877_P001	Maize	nucleus	39.23	57.04
HORVU2Hr1G038180.2	Barley	mitochondrion	60.29	56.59
Solyc07g052190.1.1	Tomato	cytosol	45.76	56.08
Solyc07g052050.1.1	Tomato	mitochondrion	30.02	55.61
AT1G54590.1	Thale cress	nucleus	47.22	54.02
Os03t0701100-01	Rice	cytosol, nucleus, plastid	30.75	39.94
HORVU4Hr1G006120.1	Barley	mitochondrion	21.31	23.16

Protein Annotations

Gene3D:1.10.720.150	Gene3D:1.20.940.10	EntrezGene:100798833	MapMan:35.2	EMBL:ACUP02002047	ncoils:Coil
EnsemblPlantsGene:GLYMA_03G155000	GO:GO:0000350	GO:GO:0000386	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005682	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0046540	GO:GO:0071021	GO:GO:0071048	UniProt:I1JNV3	InterPro:IPR036285	EnsemblPlants:KRH67222
ProteinID:KRH67222	ProteinID:KRH67222.1	PFAM:PF02840	PFAM:PF08799	InterPro:PRP4-like	InterPro:PRP4-like_sf
PANTHER:PTHR13007	PANTHER:PTHR13007:SF23	InterPro:Prp18	SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF47938
UniParc:UPI0001BA8C47	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:37029827..37034670

Molecular Weight (calculated)

46659.7 Da

IEP (calculated)

8.976

GRAVY (calculated)

-0.687

Length

413 amino acids

Sequence
(BLAST)

001: MDLLKQELLK KRQSLAQDTG GKKFFKRSEI QQKEIQKLRE QEKRELEAKS QKRLATSSDN AATAPSSSST ASASASSTIA SSSAASLTNE QNIDNLVLPK
101: PEVIRRLRFL KQPVTLFGED DDARLDRLKY VLKAGVFEVD SDMTEGQTND FLRDIAELRK RQKTGILGER KRQKADDGAA EDREGGAGDD DLSDCGGSDG
201: ADADKDLKRM KANFEELCDE DKILVFFKKL LNEWKQELRE MPEAEKRTAK GKSMVATFKQ CARYLNPLFK FCRKKVLPDD IRQALLLMVE CCMRRDYLAA
301: MDHYIKLAIG NAPWPIGVTM VGIHERSARE KIYTNSVAHI MNDETTRKYL QSVKRLMTFC QRRYPTLPSK AVEFNSLANG SDLHSLLAEE RFSGGNQAAS
401: EERLRIMPAP RDS

Best Arabidopsis Sequence Match ( AT1G03140.1 )
(BLAST)

001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES

Arabidopsis Description

F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.