Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d053726_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03140.1 | Zm00001d053726_P001 | AT4G32190.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025884_P001 | Maize | nucleus | 53.23 | 92.38 |
| Zm00001d025877_P001 | Maize | nucleus | 62.02 | 84.51 |
| EER99582 | Sorghum | nucleus | 88.37 | 78.08 |
| Zm00001d021867_P001 | Maize | nucleus | 88.37 | 77.9 |
| Zm00001d021864_P001 | Maize | nucleus | 88.11 | 77.5 |
| Os07t0571900-01 | Rice | nucleus | 82.95 | 73.29 |
| TraesCS2B01G224600.1 | Wheat | nucleus | 78.81 | 70.77 |
| TraesCS2A01G197100.1 | Wheat | nucleus | 78.55 | 70.53 |
| TraesCS2D01G205000.1 | Wheat | nucleus | 78.81 | 67.93 |
| Bra041171.1-P | Field mustard | nucleus | 12.92 | 67.57 |
| GSMUA_Achr10P... | Banana | nucleus | 65.12 | 66.49 |
| HORVU2Hr1G038180.2 | Barley | mitochondrion | 74.42 | 65.45 |
| KRH67222 | Soybean | nucleus | 68.48 | 64.16 |
| KRG95545 | Soybean | nucleus | 67.7 | 63.75 |
| Solyc09g065280.2.1 | Tomato | nucleus | 66.67 | 62.47 |
| PGSC0003DMT400049840 | Potato | nucleus | 66.67 | 62.47 |
| VIT_07s0151g01010.t01 | Wine grape | nucleus | 66.15 | 62.14 |
| AT1G03140.1 | Thale cress | nucleus | 62.79 | 57.86 |
| Bra032556.1-P | Field mustard | nucleus | 61.24 | 57.11 |
| CDY37439 | Canola | nucleus | 59.17 | 57.11 |
| PGSC0003DMT400027500 | Potato | nucleus | 51.42 | 56.86 |
| CDY32499 | Canola | nucleus | 59.43 | 56.79 |
| CDY15450 | Canola | nucleus | 61.5 | 56.0 |
| Bra030520.1-P | Field mustard | nucleus | 60.98 | 55.53 |
| Zm00001d013489_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 53.75 | 55.32 |
| Solyc07g052050.1.1 | Tomato | mitochondrion | 31.52 | 54.71 |
| PGSC0003DMT400027505 | Potato | cytosol | 51.42 | 53.21 |
| Solyc07g052190.1.1 | Tomato | cytosol | 45.74 | 52.52 |
| GSMUA_Achr1P22980_001 | Banana | nucleus | 32.56 | 49.8 |
| AT1G54590.1 | Thale cress | nucleus | 45.74 | 49.03 |
| Zm00001d006637_P001 | Maize | cytosol | 20.93 | 48.8 |
Protein Annotations
| Gene3D:1.10.720.150 | Gene3D:1.20.940.10 | EntrezGene:103642838 | MapMan:35.2 | ProteinID:AQK44930.1 | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | InterPro:IPR036285 | UniProt:K7U586 |
| PFAM:PF02840 | PFAM:PF08799 | InterPro:PRP4-like | InterPro:PRP4-like_sf | PANTHER:PTHR13007 | PANTHER:PTHR13007:SF23 |
| InterPro:Prp18 | SMART:SM00500 | SUPFAM:SSF158230 | SUPFAM:SSF47938 | UniParc:UPI000221B28C | EnsemblPlantsGene:Zm00001d025878 |
| EnsemblPlants:Zm00001d025878_P001 | EnsemblPlants:Zm00001d025878_T001 | SEG:seg | : | : | : |
Description
splicing factor Prp18 family protein
Coordinates
chr10:-:132464677..132466272
Molecular Weight (calculated)
44004.8 Da
IEP (calculated)
9.932
GRAVY (calculated)
-0.691
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLKRELEK KRKAATADFG GKSFVRRSEL EQKQLQKRRD EHRQLLAKAG TSAPSANSAA AATGSEERRI DELDLPRHEV VRRLRVLREP VTLFGEDDDA
101: RLARFKLVLK SGIIDDIDMI EGQTNDFLRD MIEMRKRQKA GRDTYAKGKS KRVDDGGAAG GSADDGDAKG SGDDANADKD SKRMRTKFEE LCNEDKILVF
201: FKKLLNEWNQ ELDEMTELEK RTAKGKSMVA TFKQCARYLS PLFEFCRKKV LPHDIRRALL VIVECCMKRD YLAAMDQYIK LAIGNAPWPI GVTMVGIHER
301: SAREKIYTNS VAHIMNDETT RKYLQSIKRL MTLSQRRYPA LPSKSVEFNS LSNGSDLQAL LSAENGSAKA SEERLRFMPS QTRLDFK
101: RLARFKLVLK SGIIDDIDMI EGQTNDFLRD MIEMRKRQKA GRDTYAKGKS KRVDDGGAAG GSADDGDAKG SGDDANADKD SKRMRTKFEE LCNEDKILVF
201: FKKLLNEWNQ ELDEMTELEK RTAKGKSMVA TFKQCARYLS PLFEFCRKKV LPHDIRRALL VIVECCMKRD YLAAMDQYIK LAIGNAPWPI GVTMVGIHER
301: SAREKIYTNS VAHIMNDETT RKYLQSIKRL MTLSQRRYPA LPSKSVEFNS LSNGSDLQAL LSAENGSAKA SEERLRFMPS QTRLDFK
001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
Arabidopsis Description
F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.