Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025884_P001 | Maize | nucleus | 50.0 | 37.22 |
| Zm00001d025878_P001 | Maize | nucleus | 48.8 | 20.93 |
| Zm00001d013489_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 45.18 | 19.95 |
| Zm00001d021867_P001 | Maize | nucleus | 51.81 | 19.59 |
| Zm00001d021864_P001 | Maize | nucleus | 51.2 | 19.32 |
| Zm00001d025877_P001 | Maize | nucleus | 2.41 | 1.41 |
Protein Annotations
| EnsemblPlants:Zm00001d006637_P001 | EnsemblPlants:Zm00001d006637_T001 | EnsemblPlantsGene:Zm00001d006637 | Gene3D:1.20.940.10 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008380 | GO:GO:0009987 | InterPro:Prp18 | PANTHER:PTHR13007 | PANTHER:PTHR13007:SF23 | PFAM:PF02840 |
| ProteinID:ONM24598.1 | SUPFAM:SSF47938 | UniParc:UPI000842C3D6 | UniProt:A0A1D6EZ95 | MapMan:35.2 | : |
Description
splicing factor Prp18 family protein
Coordinates
chr2:-:213097556..213098441
Molecular Weight (calculated)
18882.7 Da
IEP (calculated)
8.448
GRAVY (calculated)
-0.186
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRDYLAAMD QYIKLAIGNA PWPIGVTMVG IYGRSAREKI YTNSVAHIMN DETASKYLQS IKWLMTLCQR RYPALSSKSM EFNSLANGFI SIPAKSREPF
101: IDYLLSSSSD VYCIDQPQWN RSGSTATDKI WKPCCIYHLI LANLETACNS RSISLQRYEV LMDSDI
101: IDYLLSSSSD VYCIDQPQWN RSGSTATDKI WKPCCIYHLI LANLETACNS RSISLQRYEV LMDSDI
001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
Arabidopsis Description
F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.