Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d053726_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03140.1 | Zm00001d053726_P001 | AT4G32190.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d021864_P001 | Maize | nucleus | 98.41 | 98.18 |
| EER99582 | Sorghum | nucleus | 97.04 | 97.26 |
| Zm00001d025878_P001 | Maize | nucleus | 77.9 | 88.37 |
| Zm00001d025884_P001 | Maize | nucleus | 44.19 | 87.0 |
| Os07t0571900-01 | Rice | nucleus | 85.19 | 85.39 |
| Zm00001d025877_P001 | Maize | nucleus | 52.39 | 80.99 |
| TraesCS2A01G197100.1 | Wheat | nucleus | 79.27 | 80.74 |
| TraesCS2B01G224600.1 | Wheat | nucleus | 79.04 | 80.51 |
| TraesCS2D01G205000.1 | Wheat | nucleus | 79.04 | 77.28 |
| HORVU2Hr1G038180.2 | Barley | mitochondrion | 75.4 | 75.23 |
| Bra041171.1-P | Field mustard | nucleus | 12.07 | 71.62 |
| GSMUA_Achr10P... | Banana | nucleus | 59.68 | 69.13 |
| KRG95545 | Soybean | nucleus | 61.5 | 65.69 |
| KRH67222 | Soybean | nucleus | 61.5 | 65.38 |
| VIT_07s0151g01010.t01 | Wine grape | nucleus | 61.05 | 65.05 |
| Solyc09g065280.2.1 | Tomato | nucleus | 60.82 | 64.65 |
| PGSC0003DMT400049840 | Potato | nucleus | 60.59 | 64.41 |
| AT1G03140.1 | Thale cress | nucleus | 58.54 | 61.19 |
| CDY37439 | Canola | nucleus | 55.35 | 60.6 |
| CDY15450 | Canola | nucleus | 57.63 | 59.53 |
| Bra032556.1-P | Field mustard | nucleus | 56.26 | 59.52 |
| CDY32499 | Canola | nucleus | 54.67 | 59.26 |
| Bra030520.1-P | Field mustard | nucleus | 57.18 | 59.06 |
| PGSC0003DMT400027500 | Potato | nucleus | 46.92 | 58.86 |
| Zm00001d013489_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 49.2 | 57.45 |
| Solyc07g052050.1.1 | Tomato | mitochondrion | 28.02 | 55.16 |
| PGSC0003DMT400027505 | Potato | cytosol | 46.47 | 54.55 |
| Solyc07g052190.1.1 | Tomato | cytosol | 40.77 | 53.12 |
| Zm00001d006637_P001 | Maize | cytosol | 19.59 | 51.81 |
| AT1G54590.1 | Thale cress | nucleus | 40.77 | 49.58 |
| GSMUA_Achr1P22980_001 | Banana | nucleus | 28.47 | 49.41 |
Protein Annotations
| Gene3D:1.10.720.150 | Gene3D:1.20.940.10 | MapMan:35.2 | UniProt:A0A1D6IHD9 | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | InterPro:IPR036285 | ProteinID:ONM58917.1 | PFAM:PF02840 |
| PFAM:PF08799 | InterPro:PRP4-like | InterPro:PRP4-like_sf | PANTHER:PTHR13007 | PANTHER:PTHR13007:SF23 | InterPro:Prp18 |
| SMART:SM00500 | SUPFAM:SSF158230 | SUPFAM:SSF47938 | UniParc:UPI0008448D07 | EnsemblPlantsGene:Zm00001d021867 | EnsemblPlants:Zm00001d021867_P001 |
| EnsemblPlants:Zm00001d021867_T001 | SEG:seg | : | : | : | : |
Description
splicing factor Prp18 family protein
Coordinates
chr7:-:164948984..164951369
Molecular Weight (calculated)
48649.8 Da
IEP (calculated)
8.547
GRAVY (calculated)
-0.665
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLKRELEK KRKAATADFG GKSFVRRSEL EQKQLQKRRD EHRQLLAKAG TSAPSANSAA AATGSDPSNL DAAAQTAAAN PNPSSSAAAS SSAPSVPPAL
101: APKKTAQEEA LLSEERRIDE LDLPRHEVVR RLRVLREPVT LFGEDDDARL ARFKLVLKSG VIDDIDDIDM TEGQTNDFLR DMIEMRKRQK AGRDTYAKGK
201: SKRVGGGDGG DGGAAGDSAD DGDAKGSGDD ADADKDSKRM RTKFEELCNE DKILVFFKKL LNEWNQELDE MTELEKRTAK GKSMVATFKQ CARYLSPLFE
301: FCRKKVLPDD IRRALLVIVE CCMKRDYLAA MDQYIKLAIG NAPWPIGVTM VGIHERSARE KIYTNSVAHI MNDETTRKYL QSIKRLMTLC QRRYPALPSK
401: SVEFNSLANG SDLQALLSEE NGSGKASEER LRLMPASKE
101: APKKTAQEEA LLSEERRIDE LDLPRHEVVR RLRVLREPVT LFGEDDDARL ARFKLVLKSG VIDDIDDIDM TEGQTNDFLR DMIEMRKRQK AGRDTYAKGK
201: SKRVGGGDGG DGGAAGDSAD DGDAKGSGDD ADADKDSKRM RTKFEELCNE DKILVFFKKL LNEWNQELDE MTELEKRTAK GKSMVATFKQ CARYLSPLFE
301: FCRKKVLPDD IRRALLVIVE CCMKRDYLAA MDQYIKLAIG NAPWPIGVTM VGIHERSARE KIYTNSVAHI MNDETTRKYL QSIKRLMTLC QRRYPALPSK
401: SVEFNSLANG SDLQALLSEE NGSGKASEER LRLMPASKE
001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
Arabidopsis Description
F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.