Factsheet for Os07t0571900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0186400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	Os02t0186400-01	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99582	Sorghum	nucleus	85.84	85.84
Zm00001d021867_P001	Maize	nucleus	85.39	85.19
TraesCS2B01G224600.1	Wheat	nucleus	82.88	84.22
TraesCS2A01G197100.1	Wheat	nucleus	82.65	83.99
Zm00001d021864_P001	Maize	nucleus	84.25	83.86
Zm00001d025878_P001	Maize	nucleus	73.29	82.95
Zm00001d025884_P001	Maize	nucleus	41.32	81.17
TraesCS2D01G205000.1	Wheat	nucleus	82.42	80.4
HORVU2Hr1G038180.2	Barley	mitochondrion	78.08	77.73
Zm00001d025877_P001	Maize	nucleus	48.17	74.3
Bra041171.1-P	Field mustard	nucleus	11.87	70.27
GSMUA_Achr10P...	Banana	nucleus	60.27	69.66
KRH67222	Soybean	nucleus	62.1	65.86
VIT_07s0151g01010.t01	Wine grape	nucleus	61.19	65.05
KRG95545	Soybean	nucleus	60.96	64.96
Solyc09g065280.2.1	Tomato	nucleus	61.19	64.89
PGSC0003DMT400049840	Potato	nucleus	60.73	64.41
AT1G03140.1	Thale cress	nucleus	59.36	61.9
Bra032556.1-P	Field mustard	nucleus	57.76	60.96
CDY37439	Canola	nucleus	55.71	60.85
CDY32499	Canola	nucleus	56.16	60.74
CDY15450	Canola	nucleus	58.9	60.71
Bra030520.1-P	Field mustard	nucleus	58.68	60.47
PGSC0003DMT400027500	Potato	nucleus	46.35	58.0
PGSC0003DMT400027505	Potato	cytosol	47.49	55.62
Solyc07g052050.1.1	Tomato	mitochondrion	28.31	55.61
Solyc07g052190.1.1	Tomato	cytosol	41.55	54.01
GSMUA_Achr1P22980_001	Banana	nucleus	29.91	51.78
AT1G54590.1	Thale cress	nucleus	41.55	50.42
Os03t0701100-01	Rice	cytosol, nucleus, plastid	28.31	38.99

Protein Annotations

Gene3D:1.10.720.150	Gene3D:1.20.940.10	MapMan:35.2	EntrezGene:4343671	EMBL:AK101604	ProteinID:BAC84669.1
ProteinID:BAF21968.1	ProteinID:BAT02242.1	GO:GO:0000350	GO:GO:0000386	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005682
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009056	GO:GO:0009987
GO:GO:0016043	GO:GO:0046540	GO:GO:0071021	GO:GO:0071048	InterPro:IPR036285	EnsemblPlantsGene:Os07g0571900
EnsemblPlants:Os07t0571900-01	PFAM:PF02840	PFAM:PF08799	InterPro:PRP4-like	InterPro:PRP4-like_sf	PANTHER:PTHR13007
PANTHER:PTHR13007:SF23	InterPro:Prp18	UniProt:Q6YTU8	SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF47938
UniParc:UPI00001BF789	RefSeq:XP_015647118.1	SEG:seg	:	:	:

Description

Prp18 domain containing protein. (Os07t0571900-01)

Coordinates

chr7:-:23087933..23090782

Molecular Weight (calculated)

48809.9 Da

IEP (calculated)

7.425

GRAVY (calculated)

-0.752

Length

438 amino acids

Sequence
(BLAST)

001: MDLLKRELEK KRKAATADFG GKSFVRRSEL EQKQLQKRRH EEHRQLLSKA PPATSSASAA GSDPSNPNAD PAQSSAANPN PNSSSSAAAA SVPPGLAGKK
101: TAQDEALLSE ERRIDELDLP RHEVVRRLRI LREPVTLFGE DDADRLARLK FVLKSGVIDD IDDLDMTEGQ TNDFLRDMVE LRKRQRAGRD TYVKGKGKRA
201: GGGDGGEGGA GGDNADDGDG DGRRSGDDAD ADKDSKRMKT KFEELCDEDK ILVFFKKLLI EWNQELDEMP ELEKRTAKGK SMVATFKQCA RYLSPLFEFC
301: RKQVLPDDIR QALLVIVECC MKRDYLAAMD QYIKLAIGNA PWPIGVTMVG IHERSAREKI YTNSVAHIMN DETTRKYLQS IKRLMTLCQR RYPALPSKSV
401: EFNSLANGSD LQALLSEEKD PGNPPSEDRL RLMPASKE

Best Arabidopsis Sequence Match ( AT1G03140.1 )
(BLAST)

001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES

Arabidopsis Description

F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.